Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151658g00004 ATGGCTTCTGATCTGGAAGCGAAAGCCAAAGAGGCGTTCGTGGAAGATCACTTTGAACTGGCGGTTGAGCTTCTCTCTCAGGCCATTGATATCGAACCTAACAGAGCTGAACTCTATGCCGACCGTGCCCAAGCCAACATCAAACTCTCCAACTTTACTGAGGCTGTTGCTGATGCAAGCAAGGCAATCGAGTTGAATCCTTCTCTATCAAAGGCATATATGCGTAAAGGCATGGCATGCATGAAACTTGAGGAATACCAAACTGCTAAGACTGCTCTAGAGGTCGGTGCTTCATTAGCTCCAGGAGAACCAAGATTTGCCAAGTTAATCAAAGAATGTGATAAGCTCATCGCAGAAGAATCTTATGACATACCAATACAGGAGAAGACCGCAACACAGGAAGAATCAGCAAAAGAAGTTCAGCCGGAGAATGTTCTTCCAGAGCAGCCTGCAGTTGAAGTGGTTAAACCTAAATATAGGCATGAGTTCTACCAGAAACCTAATGAGGTGGTTGTAACCATATTTGCAAAGGGCATTCCAAAGGAAAATGTTACTATTGACTTTGGCGAACAAATACTAAGTGTAAGTATTAATGTTCCTGGAGAAGAGCCATATGATTTTCAGCCTCGCTTATTTGGAAAGATCACACCTTCCAGATGCCGGTATGAAGTTTTGTCCACAAAAATTGAAATACGACTCGTGAAAGCAGACCCTATTCACTGGACATCACTTGAATTCACCAGAGCTACAGTTCCACAAAGGGTGATTGTCTCATCAGCCACAGGAAGCAATAGACCGACTTACCCATCCTCAAAACCAACAAGAGTAGATTGGGATAAGCTTGAAGCCCAAGTAAAGAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGACGCAGCTCTAAACAAGTTTTTCCGGGAAATATATCAAGATGCGGATGAGGATACGCGAAGAGCAATGAGAAAGTCATTTGTGGAATCTAACGGGACAGTGCTGTCGACAAACTGGAAAGAAGTGGGATCAAAGAAGGTGGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAG 1077 0.4364 MASDLEAKAKEAFVEDHFELAVELLSQAIDIEPNRAELYADRAQANIKLSNFTEAVADASKAIELNPSLSKAYMRKGMACMKLEEYQTAKTALEVGASLAPGEPRFAKLIKECDKLIAEESYDIPIQEKTATQEESAKEVQPENVLPEQPAVEVVKPKYRHEFYQKPNEVVVTIFAKGIPKENVTIDFGEQILSVSINVPGEEPYDFQPRLFGKITPSRCRYEVLSTKIEIRLVKADPIHWTSLEFTRATVPQRVIVSSATGSNRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMRKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151658g00004 358 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Stsc151658g00004 358 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Stsc151658g00004 358 FunFam Protein SGT1 homolog 1 137 - -
Stsc151658g00004 358 Gene3D Tetratricopeptide repeat domain 1 149 IPR011990 GO:0005515
Stsc151658g00004 358 ProSiteProfiles SGS domain profile. 267 358 IPR007699 -
Stsc151658g00004 358 Pfam CS domain 160 235 IPR007052 -
Stsc151658g00004 358 PANTHER PROTEIN SGT1 HOMOLOG 1 356 IPR044563 GO:0051087
Stsc151658g00004 358 ProSiteProfiles CS domain profile. 156 245 IPR007052 -
Stsc151658g00004 358 SUPERFAMILY HSP20-like chaperones 147 250 IPR008978 -
Stsc151658g00004 358 Pfam Tetratricopeptide repeat 71 99 IPR019734 GO:0005515
Stsc151658g00004 358 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Stsc151658g00004 358 Pfam SGS domain 277 356 IPR007699 -
Stsc151658g00004 358 SMART tpr_5 2 35 IPR019734 GO:0005515
Stsc151658g00004 358 SMART tpr_5 70 103 IPR019734 GO:0005515
Stsc151658g00004 358 SMART tpr_5 36 69 IPR019734 GO:0005515
Stsc151658g00004 358 Gene3D - 157 247 IPR008978 -
Stsc151658g00004 358 FunFam Protein SGT1 homolog A 154 257 - -
Stsc151658g00004 358 CDD p23_CS_SGT1_like 162 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151658g00004 Stsc-Chr151658 14645 18722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151658g00004 1 101 U-box Gene Family AT3G07370 26.667 6.56e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151658g00004 K12795 - gmx:100780174 576.244