Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151657g00005 ATGGATACTGGCATAAAGCATGCTGTGGTCGTCAAGGTTATGGGTCGCACTGGGTCTAGAGGGCAAGTGACTCAGGTTAGAGTCAAGTTTCTGGATGATCAGAACCGTCACATCATGAGGAACGTGAAGGGACCTGTGAGAGAAGGTGACATTCTCACCCTACTTGAGTCTGAGAGAGAAGCAAGAAGGTTGCGCTAG 198 0.4949 MDTGIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151657g00005 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Stsc151657g00005 65 Pfam Ribosomal protein S28e 5 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Stsc151657g00005 65 Gene3D - 1 65 IPR012340 -
Stsc151657g00005 65 FunFam 40S ribosomal protein S28 1 65 - -
Stsc151657g00005 65 SUPERFAMILY Nucleic acid-binding proteins 3 65 IPR012340 -
Stsc151657g00005 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Stsc151657g00005 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Stsc151657g00005 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151657g00005 Stsc-Chr151657 24158 25791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151657g00005 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.231 2.88e-35 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151657g00005 K02979 - vri:117919632 99.3673