Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151655g00002 ATGGGTGTTATAACAACAACGAGGAGAATTGAACGTTTCGGGCGTACAACAACACCAACATGCAAGTACTGGGTAGCTGGGAGATGTAACAGAAATCCTTGCAGATTTTCACATAGCTTACCAACATCTCCATCCAATGTATACTATAATCCCAACACCACTTATATCCATTCCAAGAAGCCAACAATATGCGCACCAAAGCCCCTCCATAAGCCTGCAAATCATGCACCAAAGGCTGTTGTGTCTCTTGAGAAGCCAACCAAGTGCCAAGCAGAGACTATGTCTGTTGAGAAACCAATCAAATGTGAACAAAAGGATGTGTTGATTGAGAAGACTGCAATTGTGGAAGATTTGGCCACTGTTGCTAAGGCTCCGGAGAAAAAATCACTCAATATTTGTAAATATTGGATGACTGACAATTGTGTTCATGGTGACCGGTGTTCGGATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACACTTGCAAAGCTTCATGAACACAAGAAGGTTGTCACTGGGATTGCATTGCCGTCTGGTTCAGACAAACTTTATTCTGGTAGCACTGATGGCACAGTTCGAGAGTGGGACTGCAACACTGGCCGTTGTGTTAATACAATAAATCTCGATTCTGAAGTTACCTCCTTGATATCTGAGGGCCCATGGGTTTTTGCGGGTGTGAAGGATGCTGTGAAAGCATGGAATATTCAGACTGGTGCATATGTTACTCTTGATGGACCGAAGGGGCAAGTTCTTTCCTTAAATTATGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGAGGCAACCCTGATCCCAAAGCTGAGTCTCCTTTCGAACTGGTTGCAACACTTAGTGGTCATACTAAACCGGTGGTTTGTCTTGCTATTGGATGCTACAAGATGCTTTATTCTGGCTCCATGGACCATAGCATTAAGGTTTGGGACCTTGGTACATTAGATTGCACGATGACACTTAATGGCCATAGCGACACAGTCTCATCGCTTATTTGTTGGGAGGATTATTTGTTATCGAGTTCATCTGATTGCACAGTCAATGTTTGGGTGTGCACTGAGGAGGGAACTCTGAAAGTGGCATACACTCACACTGAAGAAAATGGTGTTCTTGGACTGTATGGGATGACTGATGCAGATGCCAAGCCAATATTATTCTGCTCATGCAAAGACAATTCAGTTCGTATGTATGAATTGCCGACGTTTTTAGAGAGAGGTCGACTATTTACAAGACAAGAAGTTCGATCCTTCGAGATAGGCCCTGGCGGACTGTTGTTCACTGGAGATGGGACTGGTTTACTGAATGTGTGGAAATGGTTGGAAGAGCCTAAGGTGCCATCCTCCTAG 1380 0.4391 MGVITTTRRIERFGRTTTPTCKYWVAGRCNRNPCRFSHSLPTSPSNVYYNPNTTYIHSKKPTICAPKPLHKPANHAPKAVVSLEKPTKCQAETMSVEKPIKCEQKDVLIEKTAIVEDLATVAKAPEKKSLNICKYWMTDNCVHGDRCSDLHSWFYGDGFSTLAKLHEHKKVVTGIALPSGSDKLYSGSTDGTVREWDCNTGRCVNTINLDSEVTSLISEGPWVFAGVKDAVKAWNIQTGAYVTLDGPKGQVLSLNYGNDILLAGAEDGVIYAWRGNPDPKAESPFELVATLSGHTKPVVCLAIGCYKMLYSGSMDHSIKVWDLGTLDCTMTLNGHSDTVSSLICWEDYLLSSSSDCTVNVWVCTEEGTLKVAYTHTEENGVLGLYGMTDADAKPILFCSCKDNSVRMYELPTFLERGRLFTRQEVRSFEIGPGGLLFTGDGTGLLNVWKWLEEPKVPSS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151655g00002 459 SUPERFAMILY WD40 repeat-like 142 449 IPR036322 GO:0005515
Stsc151655g00002 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 331 IPR001680 GO:0005515
Stsc151655g00002 459 PANTHER - 27 458 IPR044715 -
Stsc151655g00002 459 SMART WD40_4 200 235 IPR001680 GO:0005515
Stsc151655g00002 459 SMART WD40_4 325 362 IPR001680 GO:0005515
Stsc151655g00002 459 SMART WD40_4 412 449 IPR001680 GO:0005515
Stsc151655g00002 459 SMART WD40_4 284 322 IPR001680 GO:0005515
Stsc151655g00002 459 SMART WD40_4 368 409 IPR001680 GO:0005515
Stsc151655g00002 459 SMART WD40_4 158 197 IPR001680 GO:0005515
Stsc151655g00002 459 SMART WD40_4 237 274 IPR001680 GO:0005515
Stsc151655g00002 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 323 - -
Stsc151655g00002 459 Gene3D - 142 281 IPR015943 GO:0005515
Stsc151655g00002 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 165 197 - -
Stsc151655g00002 459 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Stsc151655g00002 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 165 206 IPR001680 GO:0005515
Stsc151655g00002 459 Pfam WD domain, G-beta repeat 162 197 IPR001680 GO:0005515
Stsc151655g00002 459 Pfam WD domain, G-beta repeat 327 361 IPR001680 GO:0005515
Stsc151655g00002 459 Pfam WD domain, G-beta repeat 286 322 IPR001680 GO:0005515
Stsc151655g00002 459 ProSitePatterns Trp-Asp (WD) repeats signature. 309 323 IPR019775 -
Stsc151655g00002 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 361 IPR001680 GO:0005515
Stsc151655g00002 459 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Stsc151655g00002 459 PRINTS G protein beta WD-40 repeat signature 309 323 IPR020472 -
Stsc151655g00002 459 PRINTS G protein beta WD-40 repeat signature 184 198 IPR020472 -
Stsc151655g00002 459 Gene3D - 282 456 IPR015943 GO:0005515
Stsc151655g00002 459 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Stsc151655g00002 459 SMART c3hfinal6 128 153 IPR000571 GO:0046872
Stsc151655g00002 459 SMART c3hfinal6 15 40 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151655g00002 Stsc-Chr151655 21365 23624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151655g00002 223 413 Miscellaneous Gene Families AT5G08390 26.500 2.57e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc151655g00002 WD40 1.5e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151655g00002 - - aip:107624831 731.095