Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151653g00005 ATGGCAAACTATCACCGGAACAACGTCGGGTCTCTTGTTCTTGGCCACCACCATACCAAATCCTCCGCCGCTACCGTCAACAGCAACTTCCGCCAATGGAACTCCCTCTCCGCCGCCTCCTTCCGCCGCATTATCTTCGACGCCCTCAGCTGCGGTGGCGCCGCTTACCGCCGCAATAACCACACCGACTCAGCCTCCTCGAGCGATGGATCCGAATCCGACTTCGAAGACCCGAACCCTAACCCAAAGCGCAATGTAAAGTCCGAGAAGCTCTCGGATCTCCTGAGCATGGCGGATTCGGAGGTGGAGACGGAAGCCGAGACGAAGAAGAAGGAAGAGGCTCTTGACGAGCTGAAGCGCCTTGTGGAGGAGCTTCGGCTTCAGTCGGAGGATTCGTCGCCGGTAAGGCGAGTCGCCGCAGCTTCAGCCGTGAGGAGGCTGGCAAGGGAGGACGCTGAGGTTAGAGTGACGCTCGCAATGCTCGGAGCGATTCCGCCGCTTGCAGCCATGCTTGATTCTGAAAACATCGATTCTCAGGTGGCTTCGCTCTACGCGTTGCTCAACCTTGGAATCGGAAACGATGCAAATAAAGCCGCTATTGTAAAAGTTGGGGCTATACACAAGATGTTGAACCTCATTGAATCTCCAGATTCTGTGGAAACATCAGTTTCTGAAGCAATAGTTGCAAATTTTCTCGGATTGAGTGCTTTGGATTCCAACAAACCAATAATTGGATCCTCTGCAGCAGTACCATTCCTGGTTAGAATCCTTCAGAATTTAGATAATAAAACAAGCCCTCAAGCCAAACAAGATGCTCTCAGAGCGATGTACAATCTTTCAATATTCCCATCCAATGTTCCATTCATTTTAGAAACCAACTTGGTCCCATTTCTGATAAACTCCATAGGAGATATGGAAGTAACCGACCGAGCCCTCGCGATCCTAAGTAACTTGGCGTCTACAAGAGAGGGTAGGAAGGCCATTAGTGCCGTCCCGGATGCTTTCCCTATCCTTGTGGATGTGTTGAATTGGACTGACTCACCGGAATGCCAAGAAAAGGCATCATATGTTTTGATGGTAATGGCGCACAAGTCCTATGGCGATAGGCAGGCCATGATTGAGGCCGGGATTGTGTCGTCGCTCCTTGAGTTGTCCCTTCTTGGCACAACATTGGCTCAGAAAAGGGCCTCAAGGATATTGGAATCTTTGAGGTTAGACAAAGGGAAGCAGGTTTCAGGGAGCTTTGGAGTGAATTTAGGCGCAACGGTATCTGCCCCAATCTGCGGATCGTCATCATCTTGTGCAAAGACAGATGGAGGGGGAAAGGATGGTTCGGACGAGGAGGAGGAAATGATGAGCGCCGAGAAGAAAGCAGTGAAGCAGTTAGTCCAGCAGAGTCTGCAAAACAATATGAGGAAGATTGCAAAGAGGGCCAATTTGCCTCAAGATACAGTTCCTTCAGATCATTTCAAATCACTCACTGCAAGTTCAACTTCCAAGAGCCTGCCATTTTGA 1515 0.5023 MANYHRNNVGSLVLGHHHTKSSAATVNSNFRQWNSLSAASFRRIIFDALSCGGAAYRRNNHTDSASSSDGSESDFEDPNPNPKRNVKSEKLSDLLSMADSEVETEAETKKKEEALDELKRLVEELRLQSEDSSPVRRVAAASAVRRLAREDAEVRVTLAMLGAIPPLAAMLDSENIDSQVASLYALLNLGIGNDANKAAIVKVGAIHKMLNLIESPDSVETSVSEAIVANFLGLSALDSNKPIIGSSAAVPFLVRILQNLDNKTSPQAKQDALRAMYNLSIFPSNVPFILETNLVPFLINSIGDMEVTDRALAILSNLASTREGRKAISAVPDAFPILVDVLNWTDSPECQEKASYVLMVMAHKSYGDRQAMIEAGIVSSLLELSLLGTTLAQKRASRILESLRLDKGKQVSGSFGVNLGATVSAPICGSSSSCAKTDGGGKDGSDEEEEMMSAEKKAVKQLVQQSLQNNMRKIAKRANLPQDTVPSDHFKSLTASSTSKSLPF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151653g00005 504 Gene3D - 303 475 IPR011989 -
Stsc151653g00005 504 MobiDBLite consensus disorder prediction 60 110 - -
Stsc151653g00005 504 Coils Coil 101 131 - -
Stsc151653g00005 504 MobiDBLite consensus disorder prediction 60 75 - -
Stsc151653g00005 504 MobiDBLite consensus disorder prediction 440 456 - -
Stsc151653g00005 504 MobiDBLite consensus disorder prediction 431 459 - -
Stsc151653g00005 504 MobiDBLite consensus disorder prediction 477 504 - -
Stsc151653g00005 504 Gene3D - 57 302 IPR011989 -
Stsc151653g00005 504 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 504 - -
Stsc151653g00005 504 MobiDBLite consensus disorder prediction 76 110 - -
Stsc151653g00005 504 MobiDBLite consensus disorder prediction 485 504 - -
Stsc151653g00005 504 SMART arm_5 324 363 IPR000225 GO:0005515
Stsc151653g00005 504 SMART arm_5 151 191 IPR000225 GO:0005515
Stsc151653g00005 504 SMART arm_5 193 236 IPR000225 GO:0005515
Stsc151653g00005 504 SMART arm_5 282 320 IPR000225 GO:0005515
Stsc151653g00005 504 SMART arm_5 237 281 IPR000225 GO:0005515
Stsc151653g00005 504 SUPERFAMILY ARM repeat 117 403 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151653g00005 Stsc-Chr151653 26080 29504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151653g00005 118 410 U-box Gene Family AT1G67530 30.000 1.19e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151653g00005 - - psat:127098188 640.188