Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151649g00005 ATGGATATGGTGAAGAAGAATTCCAAGGATCTTGCTAATAACATGTCTGCTGCTGCTGCTGATGATGATGATGAGAAGAAGGTGTACAAAGGAGTGAGGAAGAGAAAGTGGGGGAAATGGGTATCTGAAATTAGGCTTCCCAATAGCCGCGAACGCATTTGGCTTGGCTCTTACGATTCTCCTGAAAAAGCTGCGCGTGCTTTTGATGCTGCCCTTTTTTGTCTACGAGGTTGTCGCGCCAATTTCAATTTCCCCGACACTCCTTTCAATTTGCAGAACACCCGTGCTGTTCTTCATCGTTCGCTTACTCATCAACAAATTCAAGAGATTGCTGCTACCTTTGCCAATCAACAACCAAATAATAATAATGAATCCAAAGCTGATGATGATGATGCTGTTGTTGTTTCTGAAGAGCAAGAAGGAGTAGTGGACAAGAACAATGGGGACATGATGATGAATATGGATTGGACATTCTTGAAGGATTTGGGTGATACTTCTTGTTCTGCTGATTATGGTGGTAGTAGTGCTCTCTATCCTGATGATGAGTTGGACCAAATTGATCATCATCACTACTCTGGTGGTGCTGAATTGTTATACTCACTTCCAACTTTTCAGGATAATGTTGTGGATGATGATGACGATGACCCTTTTTATAACCAATCATCATTCCTTTGGAATTGGAACTTTTAA 690 0.4145 MDMVKKNSKDLANNMSAAAADDDDEKKVYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGCRANFNFPDTPFNLQNTRAVLHRSLTHQQIQEIAATFANQQPNNNNESKADDDDAVVVSEEQEGVVDKNNGDMMMNMDWTFLKDLGDTSCSADYGGSSALYPDDELDQIDHHHYSGGAELLYSLPTFQDNVVDDDDDDPFYNQSSFLWNWNF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151649g00005 229 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Stsc151649g00005 229 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Stsc151649g00005 229 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Stsc151649g00005 229 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Stsc151649g00005 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 146 - -
Stsc151649g00005 229 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Stsc151649g00005 229 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Stsc151649g00005 229 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Stsc151649g00005 229 MobiDBLite consensus disorder prediction 1 25 - -
Stsc151649g00005 229 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Stsc151649g00005 229 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151649g00005 Stsc-Chr151649 21628 22317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151649g00005 29 227 AP2-EREBP Transcription Factor Family AT1G19210 42.718 1.79e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151649g00005 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151649g00005 - - aip:107622034 266.929