Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151649g00001 ATGGCTGACGTCATGCTCATGAAAGACATTGAGGCCACCGCCTCCCGTCTCGGCCTCGACCTTTCCTCCATGGATCTTGACTCCATCCACCTCCCCCCTTCCGACGATTGCGGCATTCCCAGTGATGATGAGGATGTTTATGAAGAGGATAATCCGGAGTTTGATTCTGGATTCGGCAACATCATTGTAGTTGATAACGTTCCCGTTGTTCCCATGGAGAAATTCGAGAAGCTGGAAACCGTTATTCGCAAAATTTACAGCCAGGTTGGTGATATAAAAGAAAACGGTCTCTGGATGCCTCTTTCTTCTGACTCTACCAAGACTTTGGGTTACTGCTTCATTGAGTTCAATACCCCTCAGGAAGCTGAGCTTGCTAAAAAGGAGACTCAAGGATATAAATTGGACCGTTCCCACATATTTTCAGTCACCATGTTTGATGAATTTGATAAGTTTATGAAACTTCCAGATCAATGGGCTCCTCCTGAGTCTAAGCCATATGCTCCAGGGGAAAATCTTCAGAATTGGCTCACCGATGCAAAAGCTCGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGATGCCAGGCATTTGAAGCCTGATCCAGTTTACAAGCGTTCAGGTGCACAAGTTTGGGGAGGTGCTACAGCATTCGACCGTCTTATGCGTTATGCTCATCCTCAGGTGAAGCTAATTGATTTGTCACCTGGTGAGAAGTACTTGGTAACTTATAGCAGCCATGAACCAAGCAATCCTCGAGATGTCAATAGGGTCGTGGTAAATATATTCAATGTGAGGACCGGGAAAGTGATGAGGGATTTTAAAGGAATTGCTGATGATTTTACTGTTGGAGGTGCTGGTGGTGTCACTGGGGTGTCATGGCCTGTTTTCAAATGGAGTGGTGGAACAGATGACAAGTATTTTGCAAGGATGGGGAAAAACGTACTTTCGGTATATGAGACAGAGACCTTTTCTCTTGTTGACAAGAAGTCCTTAAAGGTTGAAAACATAATGGACTTCAGCTGGTCTCCAACTGATCCAATTATTGCACTCTATGTTCCAGAGATGGGGGGTGGTAACCAACCTGCTAGAGTAAGTCTGATTCAAATCCCAGGCAAAGAGGAACTTAGGCAGAAGAACCTTTTTAGCGTCAGTGACTGCAAGATGTATTGGCAAAGCAATGGAGATTACCTTGCTGTTAATGTAGACCGTTATACTAAAACTAAAAAAAGCACATACACTGGATTTGAGCTCTTCCATATAAAGGAACGAGACATACCCATTGAAGTTTTGGAGCTTGAAAATAAGAATGACAAGATCATTGCCTTTGCTTGGGAGCCAAAGGGTCATAGATTTGCAATTATTCATGGTGATAACCCTAAGCCTGATGTAAGCATTTACTCTATGCGGACTGCTCAGAACACTGGCCGGGTGTCGAAGCTCACTACTTTGAAAGGCAAGCAGGCAAACGCGCTGTATTGGTCACCGACAGGTCGCTTCATCGTATTAGCAGGGCTGAAAGGCCTCAATGGGCAGCTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACAGCTGAACATTTTATGGCAACGGATGTCGAATGGGATCCAACTGGAAGATATGTTGCAACGTCTGTAACTTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAGCATCTCTATCGGGTACTGAAGGATCACTTTTTTCAGTTCTTATGGAGACCAAGACCACCATCTTTCTTGAGTGCTGAGAAAGAGGAGGAGATTGCAAAAAACTTGAAGAAGTATAGTAAGAAATATGAAGCCGAAGACCAAGACGTTTCGGCACTGCTTAGTGAGCAGGAGAGGGAGCGGCGTAGAAAGTTGAAAGAAGAATGGGATAAGTGGGTGAGTGAATGGAAGGGGTTGCATGAAGAAGAGAAGTTGCAGAGGCAAAATCTTAGAGATGGAGAGGCTAGTGATGAAGAAGAGGAATACGAGGCAAAGGACATACAAGTTGAGGAAGTTATCAATGTAACTGAAGAGGTAGAAGCAGAACACGCTCAAGAGTGA 2091 0.4405 MADVMLMKDIEATASRLGLDLSSMDLDSIHLPPSDDCGIPSDDEDVYEEDNPEFDSGFGNIIVVDNVPVVPMEKFEKLETVIRKIYSQVGDIKENGLWMPLSSDSTKTLGYCFIEFNTPQEAELAKKETQGYKLDRSHIFSVTMFDEFDKFMKLPDQWAPPESKPYAPGENLQNWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRSGAQVWGGATAFDRLMRYAHPQVKLIDLSPGEKYLVTYSSHEPSNPRDVNRVVVNIFNVRTGKVMRDFKGIADDFTVGGAGGVTGVSWPVFKWSGGTDDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFSWSPTDPIIALYVPEMGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFHIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDNPKPDVSIYSMRTAQNTGRVSKLTTLKGKQANALYWSPTGRFIVLAGLKGLNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATSVTSVHEMENGFNIWSFNGKHLYRVLKDHFFQFLWRPRPPSFLSAEKEEEIAKNLKKYSKKYEAEDQDVSALLSEQERERRRKLKEEWDKWVSEWKGLHEEEKLQRQNLRDGEASDEEEEYEAKDIQVEEVINVTEEVEAEHAQE 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151649g00001 696 CDD RRM_eIF3B 59 143 IPR034363 -
Stsc151649g00001 696 Coils Coil 596 616 - -
Stsc151649g00001 696 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 210 687 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc151649g00001 696 Gene3D - 315 603 IPR015943 GO:0005515
Stsc151649g00001 696 MobiDBLite consensus disorder prediction 655 674 - -
Stsc151649g00001 696 FunFam Eukaryotic translation initiation factor 3 subunit B 389 604 - -
Stsc151649g00001 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Stsc151649g00001 696 PIRSF Transl_init_eIF3b 6 211 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc151649g00001 696 PIRSF Transl_init_eIF3b 207 692 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc151649g00001 696 Gene3D - 59 143 IPR012677 -
Stsc151649g00001 696 Pfam Eukaryotic translation initiation factor eIF2A 384 584 IPR013979 -
Stsc151649g00001 696 SUPERFAMILY RNA-binding domain, RBD 52 139 IPR035979 GO:0003676
Stsc151649g00001 696 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 691 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc151649g00001 696 SUPERFAMILY DPP6 N-terminal domain-like 234 574 - -
Stsc151649g00001 696 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Stsc151649g00001 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 137 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151649g00001 Stsc-Chr151649 885 4995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151649g00001 5 692 Eukaryotic Initiation Factors Gene Family AT5G27640 71.730 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151649g00001 K03253 - gmx:100817394 1186.4