Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151648g00004 ATGAACATTAACAGGTGCTTACATACTTTTCTTCCAAGCTTTCCATGTTGTAGAGTCATTCATTTCTTCGGTCTGAAGAAAACAAACCCTGTGGCCACTTGTTCCTTTTATCCAAAGGAGTTTGCCGATGAAGAGCTTGAATGGTTGTCCAATAAAGACGCATTTCCTGCAGTCGAAACATTTGTTGACATATCATCTATTCAGCCTAACCTATCAAAGCAACAAGGGACAGCCAACGGCGCTGCCAACATTACACTCTTAAATGGCTTTGATCACCTGAAGGTCCCCGTCCGTGCACGGAGCAAGTGTCGTAGTAGGCCTCGCCCAACTATCACCGACATCTCAAGTCGTCAGTCCTGGTGGAAACTTCCTAGTAGCGAAATTTCGAGAGCAGAAGTGTTAAAAATCCCAACCATTGGGAGGAAATGTCAGCACTGTGGATCTGAAAAGACTCCACAGTGGCGAGCCGGTCCACTCGGGCCAAAAACACTTTGTAATGCCTGTGGGGTTAGGTTTAAGTCTGGTCGGCTAGTCCCGGAGTACCGTCCGGCGAGCAGCCCAACTTTTCGTAGCGAATTGCATTCTAATTCCCATCGGAAGATAATCGAGATGAGGAAGCAGAAGCAAATGGGAATGGTTTGA 642 0.4688 MNINRCLHTFLPSFPCCRVIHFFGLKKTNPVATCSFYPKEFADEELEWLSNKDAFPAVETFVDISSIQPNLSKQQGTANGAANITLLNGFDHLKVPVRARSKCRSRPRPTITDISSRQSWWKLPSSEISRAEVLKIPTIGRKCQHCGSEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFRSELHSNSHRKIIEMRKQKQMGMV 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151648g00004 213 CDD ZnF_GATA 142 190 IPR000679 GO:0006355|GO:0043565
Stsc151648g00004 213 ProSitePatterns GATA-type zinc finger domain. 143 168 IPR000679 GO:0006355|GO:0043565
Stsc151648g00004 213 Pfam GATA zinc finger 143 176 IPR000679 GO:0006355|GO:0043565
Stsc151648g00004 213 PANTHER GATA TRANSCRIPTION FACTOR 42 209 - -
Stsc151648g00004 213 ProSiteProfiles GATA-type zinc finger domain profile. 137 173 IPR000679 GO:0006355|GO:0043565
Stsc151648g00004 213 SMART GATA_3 137 187 IPR000679 GO:0006355|GO:0043565
Stsc151648g00004 213 FunFam GATA transcription factor 134 213 - -
Stsc151648g00004 213 Gene3D - 138 210 IPR013088 GO:0006355|GO:0008270
Stsc151648g00004 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 139 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151648g00004 Stsc-Chr151648 26575 30656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151648g00004 139 211 C2C2-Gata Transcription Factor Family AT3G24050 86.301 1.18e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc151648g00004 GATA 1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151648g00004 - - ahf:112727508 312.768