Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151648g00003 ATGACGATGATGTTGTTGACAGAACTAGAAAAGGCATTCCTTGTAACGCAGAATGCAAGCTACCTTCATTCGACTCATTGGGCCAGGATGATCCTAACCATTCATTCTCTCTTTCCATGTTGTAGAGTCATTCATTTCTTCGGTCTGAAGAAAACAAACCCTGTGGCCACTTGTTCCTTTTATCCAAAGGAGTTTGCCGATGAAGAGCTTGAATGGTTGTCCAATAAAGACGCATTTCCTGCAGTCGAAACATTTGTTGACATATCATCTATTCAGCCTAACCTATCAAAGCAACAAGGGACAGCCAACGGCGCTGCCAACATTACACTCTTAAATGGCTTTGATCACCTGAAGGTCCCCGTCCGTGCACGGAGCAAGTGTCGTAGTAGGCCTCGCCCAACTATCACCGACATCTCAAGTCGTCAGTCCTGGTGGAAACTTCCTAGTAGCGAAATTTCGAGAGCAGAAGTGTTAAAAATCCCAACCATTGGGAGGAAATGTCAGCACTGTGGATCTGAAAAGACTCCACAGTGGCGAGCCGGTCCACTCGGGCCAAAAACACTTTGTAATGCCTGTGGGGTTAGGTTTAAGTCTGGTCGGCTAGTCCCGGAGTACCGTCCGGCGAGCAGCCCAACTTTTCGTAGCGAATTGCATTCTAATTCCCATCGGAAGATAATCGAGATGAGGAAGCAGAAGCAAATGGGAATGGTTTGA 714 0.4692 MTMMLLTELEKAFLVTQNASYLHSTHWARMILTIHSLFPCCRVIHFFGLKKTNPVATCSFYPKEFADEELEWLSNKDAFPAVETFVDISSIQPNLSKQQGTANGAANITLLNGFDHLKVPVRARSKCRSRPRPTITDISSRQSWWKLPSSEISRAEVLKIPTIGRKCQHCGSEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFRSELHSNSHRKIIEMRKQKQMGMV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151648g00003 237 CDD ZnF_GATA 166 214 IPR000679 GO:0006355|GO:0043565
Stsc151648g00003 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 224 - -
Stsc151648g00003 237 Pfam GATA zinc finger 167 200 IPR000679 GO:0006355|GO:0043565
Stsc151648g00003 237 ProSitePatterns GATA-type zinc finger domain. 167 192 IPR000679 GO:0006355|GO:0043565
Stsc151648g00003 237 Gene3D - 162 234 IPR013088 GO:0006355|GO:0008270
Stsc151648g00003 237 PANTHER GATA TRANSCRIPTION FACTOR 66 233 - -
Stsc151648g00003 237 SMART GATA_3 161 211 IPR000679 GO:0006355|GO:0043565
Stsc151648g00003 237 FunFam GATA transcription factor 158 237 - -
Stsc151648g00003 237 ProSiteProfiles GATA-type zinc finger domain profile. 161 197 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151648g00003 Stsc-Chr151648 26575 30656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151648g00003 163 235 C2C2-Gata Transcription Factor Family AT3G24050 86.301 8.73e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc151648g00003 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151648g00003 - - ahf:112727508 312.768