Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151648g00002 ATGGAGGCTCTTGGTATCGTGGATGACCTCTTGGATTTCTCATCAGACGTAGGTGAGGATGACGATGATGTTGTTGACAGAACTAGAAAAGGCATTCCTTGTAACGCAGAATGCAAGCTACCTTCATTCGACTCATTGGGCCAGGATGATCCTAACCATTCATTCTCTGAGTTTGCCGATGAAGAGCTTGAATGGTTGTCCAATAAAGACGCATTTCCTGCAGTCGAAACATTTGTTGACATATCATCTATTCAGCCTAACCTATCAAAGCAACAAGGGACAGCCAACGGCGCTGCCAACATTACACTCTTAAATGGCTTTGATCACCTGAAGGTCCCCGTCCGTGCACGGAGCAAGTGTCGTAGTAGGCCTCGCCCAACTATCACCGACATCTCAAGTCGTCAGTCCTGGTGGAAACTTCCTAGTAGCGAAATTTCGAGAGCAGAAGTGTTAAAAATCCCAACCATTGGGAGGAAATGTCAGCACTGTGGATCTGAAAAGACTCCACAGTGGCGAGCCGGTCCACTCGGGCCAAAAACACTTTGTAATGCCTGTGGGGTTAGGTTTAAGTCTGGTCGGCTAGTCCCGGAGTACCGTCCGGCGAGCAGCCCAACTTTTCGTAGCGAATTGCATTCTAATTCCCATCGGAAGATAATCGAGATGAGGAAGCAGAAGCAAATGGGAATGGTTTGA 693 0.4791 MEALGIVDDLLDFSSDVGEDDDDVVDRTRKGIPCNAECKLPSFDSLGQDDPNHSFSEFADEELEWLSNKDAFPAVETFVDISSIQPNLSKQQGTANGAANITLLNGFDHLKVPVRARSKCRSRPRPTITDISSRQSWWKLPSSEISRAEVLKIPTIGRKCQHCGSEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFRSELHSNSHRKIIEMRKQKQMGMV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151648g00002 230 ProSiteProfiles GATA-type zinc finger domain profile. 154 190 IPR000679 GO:0006355|GO:0043565
Stsc151648g00002 230 ProSitePatterns GATA-type zinc finger domain. 160 185 IPR000679 GO:0006355|GO:0043565
Stsc151648g00002 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 217 - -
Stsc151648g00002 230 Pfam GATA zinc finger 160 193 IPR000679 GO:0006355|GO:0043565
Stsc151648g00002 230 CDD ZnF_GATA 159 207 IPR000679 GO:0006355|GO:0043565
Stsc151648g00002 230 FunFam GATA transcription factor 151 230 - -
Stsc151648g00002 230 SMART GATA_3 154 204 IPR000679 GO:0006355|GO:0043565
Stsc151648g00002 230 Gene3D - 155 227 IPR013088 GO:0006355|GO:0008270
Stsc151648g00002 230 PANTHER GATA TRANSCRIPTION FACTOR 52 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151648g00002 Stsc-Chr151648 26575 30656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151648g00002 156 228 C2C2-Gata Transcription Factor Family AT3G24050 86.301 5.02e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc151648g00002 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151648g00002 - - ahf:112727508 387.497