Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151648g00001 ATGTCTGGGAAGAATAAGAACAAGGAGGAAGGGAAAGCTTTGTCAAAAGGGTATTCTGTGATTCTACTCTTGCTGTTATTTTTGTCTCTTCTTCTTTGTACCACAGAAGGGTTGAACACAGAGGGGCGAATCCTTTTACAACTCAAGAATGGTCTCCATGACAAGTATAATAATCTGCAAAACTGGAACCCTTCTGATCAAACTCCATGTGATTGGGTAGGTGTAAATTGCTCTAATTATGAATATAATAATAGTCCAGTTGTCATGTCCCTTGATTTGAGTTCAATGGATCTTTCTGGAATCTTAAATGGTAGTAGCATTGGGGGTTTGACCCATCTAACTTATCTCAATCTTTCTCACAATAAGTTGAGTGGGAATATACCAAAGGAGATTGGAGATTGCTTGAATTTGGAGCATCTTTACTTGAACAATAACCAATTTGAGGGGCCAATTCCTGATGAAATTGGAAAGTTGTCTAGTTTGAGAAGATTGAATATATGCAACAACAAACTCAATGGTGTTTTTCCAGATGAGATGGGGAACTTGTCTTCACTGGTTGAATTGGTGGCTTATAGCAACTTTCTTGTGGGTCCCTTGCCTAGTACCATTGGGAATCTCAAGAATCTTGTGACTTTCAGAGCTGGGGCAAATAACATTACTGGTTCATTGCCAAAGGAAATTAGTGGCTGTGAGAGTTTGATGTATCTAGGTCTTGCCCAAAATGATATCTCAGGTGTTCTTCCAAGTGAAATTGGGATTCTACAAAACCTAACAGAATTGATTCTCTGGGATAACCAGTTATCAGGGCCTATTCCCAAAGAGATTGGGAATCTAACCAATCTTGAGATTCTTGCTTTGTATTGGAATGATCTTGTAGGACCTATACCTCCAGAGATTGGGAGCCTTAACTCATTGAAGTTTTTGTATCTATACAAGAACAATCTGAATGGAACAATTCCAAGGGAAATTGGGAACCTTTCTTCTGCTCTAGAGATTGATCTCTCAGAGAACTCTTTAGTAGGTTACATCCCTTCCGAGCTGAGCAGAATTCGCGACCTGCATTTGCTCTTTCTTTTTGAGAACCATCTAATCGGTGTCATACCGGACGAGCTCAGCAGCTTGAGGAATCTGTCGAGGCTAGACCTCTCGATGAATCGCCTTACCGGCTCGATCCCTTCAGGATTTCAGTATCTTACTAACATGTCTCAGTTGCAGCTCTTTGACAACAATTTGAGTGGTGTTATTCCTCAAGAACTTGGACTCACTAGTCCTCTTTGGGTGGTTGATTTCTCTGATAACAATTTGACAGGAACAATACCTCCTCATCTATGCTGGAACTCTCACCTGATGCTGCTGAACCTTCAATCAAACCGGCTCTATGGAAACATACCGCGAGGTATACTCAAGTGCGAATCGCTAACTCAGCTCCTTGTCGTTGGAAACATGCTTACAGGTGGCTTCCCTTTAGAGCTCTGCAAGCTTTCGAACTTCATCGCGATCGAGTTGAATGAGAACAAGTTCAGTGGTCCAGTTCCTCCTTCCATAGCCAACTGCAGCAAGTTACAAAGGCTTCACATAGCAAACAATTTCTTCACAATGGAGTTACCTAAGGAGATTGGAAACCTTTCTCAGCTGGTGACTTTCAATGTTTCATCAAACCATTTCACCGGAAGAATTCCATCCGAAATCTTTAAGTGTCAGATGCTGCAAAGGCTTGATCTCAGTAACAACAGGTTCATCGGTTCCTTGCCTAATGAGATAGGATCACTCCAACATTTGGAGATTCTCAAACTCTCTGGCAATGAACTCTCCGGAGAAATCCCTGCTGAATTAGGCAATCTATCTCATTTGAACTGGCTGCAGATGGATGGAAATTTGTTTTCCGGCGAAATACCGGCTCAGCTCGGCCACCTCTCGACCTTGCAGATCGGAATGGATCTAAGTCACAACAATCTTTCAGGGAGAATTCCATCTCAGCTTGGTAATCTCAACATGCTTGAGTATCTCTATCTCAATAACAATCATCTGGACGGCGAAATTCCGGGCTCGTTCGACCAGCTTTCGAGCTTGCTCGGATGTAATTTCTCTTACAACAACCTCTCCGGACCGATCCCTTCCGATAAGATCTTCCAAAACATGGCTTTAAGCAGCTTTGTTGGCGGTAACAACGACCTCTGCGGCGCGCCTCTAAACGATTGCAACTCCGATCTGTCTTCTCGCGGTTTTCCTCCGGCTAAAACCGAGGATTCGCGCCGCGCTAAGATAGTCATGATCGTTGCAGCCACCGTGGGAGGCGTTTCTCTCATCCTAATCTTGGTGATCTTGTATGTTATGAGACGGCCAGGGAGTTACAGTGGTTCCTTGGGAGACACGGAATCTCCCTGCCTCGATTCGGACATCTATTTCCCTCCGAAGGACGGATTCACATTCCAGGATCTTGTTGAAGCCACAAAGAGGTTTCACGAGAGCTACGTGATCGGCCGGGGAGCATGCGGGACGGTTTACAAGGCGGTTATGAAATCCGGGAAGACCATTGCTGTTAAGAAGCTTGCATCAAACAGAGAAGGGAACAACATTGAGAACAGTTTTAGAGCTGAGATATTGACATTGGGGAAGATTAGGCATAGAAACATTGTGAAGCTTTATGGATTCTGTTACCACCAAGGCTCAAATCTCTTGCTTTATGAGTACATGGAAAGAGGAAGCTTAGGAGAAGTGTTGCATGGTTCTGCTACGAATTTGGAGTGGCCAATTAGGTTCATGATTGCTCTTGGTGCTGCTGAGGGTCTTGCTTACTTGCACCATGATTGCAAACCGAAGATTATTCACCGGGATATAAAGTCTAATAACATTCTTCTTGATGAGAATTTTGAGGCTCATGTTGGTGATTTTGGGTTGGCTAAAGTCATTGACATGCCACAATCAAAATCCATGTCTGCAGTTGCTGGATCTTATGGCTATATTGCTCCTGAATATGCATACACCATGAAGGTAACAGAAAAGTGTGACATTTATAGCTATGGCGTTGTGCTCTTGGAACTTCTAACAGGTAGAGCTCCAGTTCAACCATTGGAACAAGGTGGTGATCTTGTGACATGGGTTAAAACCCATATAAGGAGCCACAACAACACATTGACGCCGGCGATCCTCGATGATCGCGTGGATCTTGAGGAACAAGTAACTGTCAATCACATGCTCACTGTCCTCAAGATTGCTCTGCTTTGCACAAGCATGTCACCTTCTGAGAGGCCTTCAATGCGCGAAGTCGTGTTGATGCTTATCGAGTCGAATGAGCGCGAAGGTAACTTAACCCTCACTCGACCGTACCATGATCTTCCTTCCAAGGACTCCACACATTAG 3360 0.4387 MSGKNKNKEEGKALSKGYSVILLLLLFLSLLLCTTEGLNTEGRILLQLKNGLHDKYNNLQNWNPSDQTPCDWVGVNCSNYEYNNSPVVMSLDLSSMDLSGILNGSSIGGLTHLTYLNLSHNKLSGNIPKEIGDCLNLEHLYLNNNQFEGPIPDEIGKLSSLRRLNICNNKLNGVFPDEMGNLSSLVELVAYSNFLVGPLPSTIGNLKNLVTFRAGANNITGSLPKEISGCESLMYLGLAQNDISGVLPSEIGILQNLTELILWDNQLSGPIPKEIGNLTNLEILALYWNDLVGPIPPEIGSLNSLKFLYLYKNNLNGTIPREIGNLSSALEIDLSENSLVGYIPSELSRIRDLHLLFLFENHLIGVIPDELSSLRNLSRLDLSMNRLTGSIPSGFQYLTNMSQLQLFDNNLSGVIPQELGLTSPLWVVDFSDNNLTGTIPPHLCWNSHLMLLNLQSNRLYGNIPRGILKCESLTQLLVVGNMLTGGFPLELCKLSNFIAIELNENKFSGPVPPSIANCSKLQRLHIANNFFTMELPKEIGNLSQLVTFNVSSNHFTGRIPSEIFKCQMLQRLDLSNNRFIGSLPNEIGSLQHLEILKLSGNELSGEIPAELGNLSHLNWLQMDGNLFSGEIPAQLGHLSTLQIGMDLSHNNLSGRIPSQLGNLNMLEYLYLNNNHLDGEIPGSFDQLSSLLGCNFSYNNLSGPIPSDKIFQNMALSSFVGGNNDLCGAPLNDCNSDLSSRGFPPAKTEDSRRAKIVMIVAATVGGVSLILILVILYVMRRPGSYSGSLGDTESPCLDSDIYFPPKDGFTFQDLVEATKRFHESYVIGRGACGTVYKAVMKSGKTIAVKKLASNREGNNIENSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGEVLHGSATNLEWPIRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLEQGGDLVTWVKTHIRSHNNTLTPAILDDRVDLEEQVTVNHMLTVLKIALLCTSMSPSERPSMREVVLMLIESNEREGNLTLTRPYHDLPSKDSTH 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151648g00001 1119 SUPERFAMILY Protein kinase-like (PK-like) 799 1093 IPR011009 -
Stsc151648g00001 1119 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 37 199 - -
Stsc151648g00001 1119 Gene3D Transferase(Phosphotransferase) domain 1 898 1107 - -
Stsc151648g00001 1119 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 581 1088 - -
Stsc151648g00001 1119 ProSiteProfiles Protein kinase domain profile. 820 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151648g00001 1119 SUPERFAMILY L domain-like 40 327 - -
Stsc151648g00001 1119 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 790 897 - -
Stsc151648g00001 1119 SUPERFAMILY RNI-like 284 634 - -
Stsc151648g00001 1119 Gene3D Ribonuclease Inhibitor 392 442 IPR032675 -
Stsc151648g00001 1119 Gene3D Ribonuclease Inhibitor 443 513 IPR032675 -
Stsc151648g00001 1119 SUPERFAMILY Outer arm dynein light chain 1 583 728 - -
Stsc151648g00001 1119 SMART serkin_6 820 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151648g00001 1119 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Stsc151648g00001 1119 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 422 737 - -
Stsc151648g00001 1119 Pfam Protein kinase domain 821 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151648g00001 1119 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 294 398 - -
Stsc151648g00001 1119 Pfam Leucine Rich Repeat 666 687 IPR001611 GO:0005515
Stsc151648g00001 1119 Gene3D Ribonuclease Inhibitor 294 391 IPR032675 -
Stsc151648g00001 1119 Gene3D Ribonuclease Inhibitor 37 193 IPR032675 -
Stsc151648g00001 1119 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 200 291 - -
Stsc151648g00001 1119 Gene3D Ribonuclease Inhibitor 611 735 IPR032675 -
Stsc151648g00001 1119 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 898 1108 - -
Stsc151648g00001 1119 Gene3D Phosphorylase Kinase; domain 1 795 897 - -
Stsc151648g00001 1119 Gene3D Ribonuclease Inhibitor 194 293 IPR032675 -
Stsc151648g00001 1119 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Stsc151648g00001 1119 Pfam Leucine rich repeat 569 626 IPR001611 GO:0005515
Stsc151648g00001 1119 Gene3D Ribonuclease Inhibitor 514 610 IPR032675 -
Stsc151648g00001 1119 SMART LRR_typ_2 110 134 IPR003591 -
Stsc151648g00001 1119 SMART LRR_typ_2 663 686 IPR003591 -
Stsc151648g00001 1119 SMART LRR_typ_2 374 397 IPR003591 -
Stsc151648g00001 1119 SMART LRR_typ_2 542 566 IPR003591 -
Stsc151648g00001 1119 SMART LRR_typ_2 254 278 IPR003591 -
Stsc151648g00001 1119 SMART LRR_typ_2 302 326 IPR003591 -
Stsc151648g00001 1119 SMART LRR_typ_2 158 182 IPR003591 -
Stsc151648g00001 1119 SMART LRR_typ_2 590 614 IPR003591 -
Stsc151648g00001 1119 ProSitePatterns Serine/Threonine protein kinases active-site signature. 941 953 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151648g00001 Stsc-Chr151648 3899 8778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151648g00001 38 1095 Receptor kinase-like Gene Family AT5G56040 37.196 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc151648g00001 Pkinase 8.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151648g00001 - - gmx:100805792 1682.15