Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151647g00001 ATGGTGTCAAGATCGTATGTTAATCTTCTAGACTTAGCTGGAGATTTACTTGGTATTCCAAATACCCCAAGAGCTCTCCCAAGGGTTATGACTGTTCCAGGAATTATTTCTGATCTGGATGCTTGTGGTAGAAATGATGCGGATTCAGATGTTAGTTCATCTGGGTGTCGGGAGAAGAAAATCATAGTGGCAAACATGTTGCCATTGCAGGCTAAAAGAGATATAGATACTGGTAAATGGTGCTTCAGTTTGGACGAGGATTCAATCTTATTACAACTAAAGGATGGTTTTTCTTCTGAGACTGAAGTGATCTATGTGGGATCCCTCAAAGTTGAAATAGATGCTAATGAGCAGGAAGAAATTGCTCAGAAATTACTGGAGGATTTTAATTGCGTGCCTACCTTTCTTCCCCATGNNNNNNNNNNTTTTTGTAAGCAGCAACTTTGGCCACTCTTTCATTATATGCTTCCTATATGCCCTGATCATGGTGACCGCTTTGACCGTGTGCTCTGGCAGGCTTATGTTTCTGCAAATAAAATATTTGCAGACAAGGTGATGGAAATAATCAATCCTGATGAGGATTTTGTTTGGGTTCATGACTACCACTTGATGGTTTTGCCTACATTCTTGAGGAAGCGGCATAATAGAGTAAAACTTGGATTCTTTCTCCACAGTCCTTTCCCATCATCTGAAATATACCGAACTTTGCCGGGAATCAGTCTGAAGCTTCTAGCTCTGGAGCAGCTGCTGGAGCAGAATCCAGATTTGCAGGGAAAAGTTGTCCTAGTTCAGATTGTGAATCCTGCGAGGGGCTCGGGGAAGGACGTTCAGGAAGCAAAGAAAGAAACCTACTCAATTGTCCAGAGACTCAATGGTACTTATGGTTCAACCAATTATCAACCGGTTGTATTGATTGACCGTTATGTTGCTCGATTTGAGAAGAGTGCCTACTATGCTGTTGCAGAATGTTGCATTGTTAATGCTGTGAGGGATGGCATGAACTTAGTCCCATATAAATATATTGTCTGTAGACAAGGAACTGAACAACTGGATAAAACATTGGGCAGAACAGCTGATTCTCCTCGTTCAAGCATGCTTGTTGTGTCTGAGTTTATTGGTTGTTCTCCTTCTCTAAGCGGGGCTATCAGGGTCAATCCCTGGGACATAGATGCTGTGGCTGATGCTTTGAATTCAGCACTCACTATGAATGATTCAGAGAAGCAATTGAGGCATGAGAAACACTACAGATATGTCAGTTCTCATGATGTGGCATATTGGGCACGCAGCTTTATGCATGATTTGGAAAGAGCATGCAAGGATCACTTTACCAAAAGGTGCTGGGTAATTGGGTTGGGCCTGGGGGTTAGAGTTGTTTCCCTTTCTCCTGGTTTTAGGAAGTTGTCCATTGACCACATTGTTTCAGCTTACAAAAGAACCAGTAGGCGGGCCATATTTCTTGATTATGATGGTACTCTTGTACCACAATCATCTATAAATAAAATCCCCGGTCCTGAAGTCATCTCTCTGCTAAATGCTCTGTGTAATGATGCCAAAAACATTGTGTTCATTGTTAGTGGAAGGGGAAGAGATTCTCTATCTGAGTGGTTTACTTCTTGCAAAATGATTGGACTGGCGGCTGAACATGGCTACTTTTTAAGGTGCAATCAAGATTCTGAATGGGAAATGAGCCATTTATCAGCGGACCTTGAGTGGAAAAGGGTTGTGGAGCCCATTATGCAATCATATACAGAGGCTACTGATGGGTCAAATATTGAAATTAAGGAAAGTGCTTTGGTGTGGCATCATCGAGATGCAGACCCTGATTTCGGTTCATGCCAAGCCAAAGAGTTATTGAGTCACTTAGAAAGTGTGCTTACCAATGAACCTGCAATTGTTAAAAGGGGCCAGCATATTGTTGAAGTTATGCCACAGGGTATAAGCAAAGGTCAGGTAGCTGAGAAGGTTCTTACGAACATGGTTAATGGTGGTAATTCACCAGATTTTGTATTGTGCATTGGAGATGATATTTCTGATGAAGACATGTTTGAGAGCATATTAAAGACAGTGTCATGCTCATCATTGCAAGTAGCTCCAGATATCTTTGCCTGCACCGTTGGTCGCAAGCCAAGCAAGGCCAAGTATTATCTTGATGATCCTGCAGATGTCATTAAGTTGCTGCAAGGACTTGGTTCTTCATCTAATCCAAAGCCTAGGCATTCACCCCATTTCCAGGTTTCTTTTGAAAGCACAGTTTGA 2256 0.4193 MVSRSYVNLLDLAGDLLGIPNTPRALPRVMTVPGIISDLDACGRNDADSDVSSSGCREKKIIVANMLPLQAKRDIDTGKWCFSLDEDSILLQLKDGFSSETEVIYVGSLKVEIDANEQEEIAQKLLEDFNCVPTFLPHXXXXFCKQQLWPLFHYMLPICPDHGDRFDRVLWQAYVSANKIFADKVMEIINPDEDFVWVHDYHLMVLPTFLRKRHNRVKLGFFLHSPFPSSEIYRTLPGISLKLLALEQLLEQNPDLQGKVVLVQIVNPARGSGKDVQEAKKETYSIVQRLNGTYGSTNYQPVVLIDRYVARFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTEQLDKTLGRTADSPRSSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALNSALTMNDSEKQLRHEKHYRYVSSHDVAYWARSFMHDLERACKDHFTKRCWVIGLGLGVRVVSLSPGFRKLSIDHIVSAYKRTSRRAIFLDYDGTLVPQSSINKIPGPEVISLLNALCNDAKNIVFIVSGRGRDSLSEWFTSCKMIGLAAEHGYFLRCNQDSEWEMSHLSADLEWKRVVEPIMQSYTEATDGSNIEIKESALVWHHRDADPDFGSCQAKELLSHLESVLTNEPAIVKRGQHIVEVMPQGISKGQVAEKVLTNMVNGGNSPDFVLCIGDDISDEDMFESILKTVSCSSLQVAPDIFACTVGRKPSKAKYYLDDPADVIKLLQGLGSSSNPKPRHSPHFQVSFESTV 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151647g00001 751 CDD HAD_TPP 483 724 - -
Stsc151647g00001 751 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 238 730 IPR001830 GO:0003824|GO:0005992
Stsc151647g00001 751 Pfam Glycosyltransferase family 20 59 237 IPR001830 GO:0003824|GO:0005992
Stsc151647g00001 751 Pfam Glycosyltransferase family 20 238 435 IPR001830 GO:0003824|GO:0005992
Stsc151647g00001 751 NCBIfam trehalose-phosphatase 480 727 IPR003337 GO:0003824|GO:0005992
Stsc151647g00001 751 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 439 - -
Stsc151647g00001 751 SUPERFAMILY HAD-like 482 729 IPR036412 -
Stsc151647g00001 751 CDD GT20_TPS 61 435 IPR001830 GO:0003824|GO:0005992
Stsc151647g00001 751 Gene3D - 611 743 IPR023214 -
Stsc151647g00001 751 Gene3D - 481 599 IPR023214 -
Stsc151647g00001 751 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 481 598 - -
Stsc151647g00001 751 FunFam Alpha,alpha-trehalose-phosphate synthase 233 419 - -
Stsc151647g00001 751 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 611 742 - -
Stsc151647g00001 751 Pfam Trehalose-phosphatase 485 719 IPR003337 GO:0003824|GO:0005992
Stsc151647g00001 751 Gene3D Glycogen Phosphorylase B; 232 419 - -
Stsc151647g00001 751 NCBIfam HAD-IIB family hydrolase 483 684 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151647g00001 Stsc-Chr151647 23227 27898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151647g00001 238 751 Trehalose Biosynthesis Gene Families AT1G60140 69.844 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151647g00001 K16055 - gmx:100818536 882.863