Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151641g00004 ATGTTCCATGGAGCTCAAGGAGACCCTCAAATCAATTCACTCATCAAAGCTTGCGGAAGGAGCAGATCATCAAGCAGCTTGTTCAACTTCAACAAGATTCTAAATGCAACATTGGAAGACCTTAGAAACCAAAGCACAAGAAAGAACGACTATTTTGGCACTTCACATAATGTTATGGGAGGTGACTCTGTTTATGGCTTGTTCCAATGTAGAAGATATCTTTCTAACACCGATTGCGCAACCTGCGTCGATGCTGCTGCCGCGGATATCCTTACTTGTTCCGGTGCGGTTAGTGCCCATATAGTATATGATGGGTGCTTCCTCAGATATGGACCATACAGCTTCTACTCTGATACCGTTCGTGATGCCAGTGGAATTGTTTGCGGAAATCAAACTTCAAAGGGAGAAACCAATGATTTTAGTGAAGAAGCAAAAGAAGTTCTAAACAAGCTACAAATGGCAACACCCAGAATCCCTAATCACTATGCAGCCACAAAGACAACATTGGTTGGTGGCGGTGCAATCTATGCTATTGCACAATGTGTTGAAACCGTTTCACAAAATGGTTGTCATGATTGCCTCAACCTTGGATTCAACAACATACAAGGTTGCCTTCCCTACATTGATGGTAGGGAATATGATGCCGGCTGTTTCATGAGATACTCTCAGAAACCCTTCTTTGATGGTAACCAGACCATTGATATCACACCCTTTTTAGACAAAGGTCATTCACGCAAGAAGTTGTACCTTTTAATATTTGGTGTTTTGGGAGGTGTAGCTCTTATGATTATGATCTTCTTTGCATTATATCATTTATATTCCAAACATGGTTTGAAGAAAACCATGACTGTCCCTAAAGGTGAAATATCAGGAGCAACAAAGTTGAAAGCTCCAATTAACTATAAATACAATGATTTAAAAGCTGCAACAAACAATTTTAGTGAAGAAAATAGACTAGGAGGGGGTGGATTTGGCAATGTATACAAGGGAACTTTGAAAAACGGTAAAGTTATTGCGGTGAAGAAATTGTTCACAGGCCAATTGAACAAGAAGGATGATGACTTTGAAACTGAAGTGAAGTTTCTGAGTAATGTTCATCACCGAAATCTTGTTAGACTCCTTGGATTTTCCAATAAAGGCCAAGACAGAGTAATTGTTTATGAATATATGACAAATGGCAGTCTTGATAAATTCTTATTTGGGTTTGAGACAGGCAAGAAAAAAGGTTATTGCCTAAATTGGAAGCAACGTTATGATATAGCTTTGGGCACAGCAAGGGGATTGGCATATCTACATGAAGAGTTTTATGTTTCAATCATACATAGAGATATCAAGAGTAGCAACATTCTCTTAGATGATAAACTTCAGCCCATAATAGCTGATTTTTGCTTGGCAAGATTTCTAGCAAGTGACCAATCCAAGCTCAAAACAAAATTTGCAGGAACATTGGGATATACAGCACCTGAATATGCAATTCACGGCCAATTATCTCCAAAAGTTGATACATATAGCTATGGTATTGTAGTCTTAGAAATTGCATGGGAACTTTATGAGAAAGGCAAGCACATGGAATTAGTGGATAAGAAATTAGATGCTAATGAGTATGATTTGGAAGAAGTAAAAAGAGTTATAGAGATTGGTTTAATGTGCACTCAAGCATCAGCAGCAAAGAGGCCAAAAATGTCTGAAGTCGTAGTCTTACTCACAAGTAAGGCACAACTTGACCATTTGCAACCTTCAATCCCTGTGTTTGTTGACTCAAACTTGAAACCCCAAGAAAGTACTTTTTACTCAAATGCAACTGTCTCTGATTCTATTGTATCAGCTAGATAA 1833 0.3846 MFHGAQGDPQINSLIKACGRSRSSSSLFNFNKILNATLEDLRNQSTRKNDYFGTSHNVMGGDSVYGLFQCRRYLSNTDCATCVDAAAADILTCSGAVSAHIVYDGCFLRYGPYSFYSDTVRDASGIVCGNQTSKGETNDFSEEAKEVLNKLQMATPRIPNHYAATKTTLVGGGAIYAIAQCVETVSQNGCHDCLNLGFNNIQGCLPYIDGREYDAGCFMRYSQKPFFDGNQTIDITPFLDKGHSRKKLYLLIFGVLGGVALMIMIFFALYHLYSKHGLKKTMTVPKGEISGATKLKAPINYKYNDLKAATNNFSEENRLGGGGFGNVYKGTLKNGKVIAVKKLFTGQLNKKDDDFETEVKFLSNVHHRNLVRLLGFSNKGQDRVIVYEYMTNGSLDKFLFGFETGKKKGYCLNWKQRYDIALGTARGLAYLHEEFYVSIIHRDIKSSNILLDDKLQPIIADFCLARFLASDQSKLKTKFAGTLGYTAPEYAIHGQLSPKVDTYSYGIVVLEIAWELYEKGKHMELVDKKLDANEYDLEEVKRVIEIGLMCTQASAAKRPKMSEVVVLLTSKAQLDHLQPSIPVFVDSNLKPQESTFYSNATVSDSIVSAR 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151641g00004 610 Gene3D Transferase(Phosphotransferase) domain 1 390 580 - -
Stsc151641g00004 610 Gene3D - 123 226 IPR038408 -
Stsc151641g00004 610 Gene3D - 12 115 IPR038408 -
Stsc151641g00004 610 ProSiteProfiles Gnk2-homologous domain profile. 122 226 IPR002902 -
Stsc151641g00004 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Stsc151641g00004 610 ProSiteProfiles Protein kinase domain profile. 313 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151641g00004 610 ProSiteProfiles Gnk2-homologous domain profile. 12 115 IPR002902 -
Stsc151641g00004 610 CDD STKc_IRAK 319 569 - -
Stsc151641g00004 610 FunFam Cysteine-rich receptor-like protein kinase 2 123 226 - -
Stsc151641g00004 610 ProSitePatterns Protein kinases ATP-binding region signature. 319 342 IPR017441 GO:0005524
Stsc151641g00004 610 Pfam Salt stress response/antifungal 26 111 IPR002902 -
Stsc151641g00004 610 Pfam Salt stress response/antifungal 128 223 IPR002902 -
Stsc151641g00004 610 SMART serkin_6 313 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151641g00004 610 FunFam Cysteine-rich receptor-like protein kinase 2 279 389 - -
Stsc151641g00004 610 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 66 594 - -
Stsc151641g00004 610 Pfam Protein kinase domain 314 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151641g00004 610 SUPERFAMILY Protein kinase-like (PK-like) 303 582 IPR011009 -
Stsc151641g00004 610 Gene3D Phosphorylase Kinase; domain 1 278 389 - -
Stsc151641g00004 610 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 390 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151641g00004 Stsc-Chr151641 26174 29739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151641g00004 36 589 Receptor kinase-like Gene Family AT1G70520 37.691 1.68e-113 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151641g00004 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151641g00004 - - gmx:100813585 684.485