Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151638g00002 ATGGGGTGCGTTAATGGTAAACCAGATTCCCCTGTTCATCGTCGCAGTAACTTAAACAGGTTGAAAAAGGAAAACGCTTATGGCAATCCGAAACGAGCTTCATCTTCTTCTACATCAACTATCAAACCAGGAAGAAGTTATCGTGATTATAGTTCTAATAAAATAGCTAGGGCTGAAGATGATCGCAACAAGTTACGGGTTGCTGCTCATGGATACATGGATAATAATGAAAAGAAAAAGGAAAAAGAAAAAGAAGAGGAAAATAAAATAGAAAAGTGTATAGCTACTAATGACATTGGTGAGTTAATTGAGGAAGAATCTAAGATATCTGAAGACAGTAAAAAGAAGAAGAACAAGATTGCAGGTTATGAATTTGTTGAAGGTTGGCCCAAGTGGTTGGTTGATAATATCCCTAAAGAGGTTCTGTCTGCTTTAGTCGCCAAGAGCGCTGACTCCTATGAAAAACTTGACAAAGTTGGACGGGGAACATATAGCAATGTCTACAAAGCCCGTGACAAGGATACTGGAAAGATTGTTGCCTTGAAGAAGGTTCGTTTTGACACGTCTGATTCTGAGAGTATAAAGTTCATGGGCAGAGAGATTATGATACTGCAGAAGCTGGATCATCCTAATGTCATTAAGCTTAGAGGATTGGCAACATCAAGGATGCAGTATAGCCTTTATCTAGTCTTTGATTATATGCAATGTGATCTTTCCAGAATCATCTCCCGCCCTGATGAAAGACTTACTGAGTCTCAGATTAAGTGTTATATGCAACAACTGCTTGCTGGACTCCAACATTGTCATGAGAGGGGAATTATTCACCGAGATATCAAATCTTCCAACCTGCTAATAGATAGAAGAGGTTCTTTGAAAATAGCAGATTTTGGACTAGCAAATGTTAAACATCAAGATCCTCTTACAAATCGAGTGGTAACACTTTGGTATAGAGCTCCTGAACTCCTTTTAGGTTCAACTCATTATGGATACGACATTGATCTCTGGAGTGCTGGATGCTTATTAGCTGAGATGTTTGTTGGAAGGCCATTCATGCCGGGAAGAACAGAGGTTGAGCAGCTTCACCTGATCTTCAAACTATGTGGGTCCCCTCCGGATGATTATTGGATAAAAATGAAGCTAAGATCAAACTACTTACCCTCACAACATTACAAACCTAATTATGAAGACTACTTCCGAGGGTTTCCTTCCTCTTCAATGGATCTGCTGACCACACTTCTTCATCTTGATCCTGCATGTCGTGGCAGTGCTGCCTCTGCTCTTGAAAGTGAATTCTTCAAAACTAGTCCATTAGCCTGTGACCCTTCAGCCTTACCAGTAATCTACAAAGAAGAGGATGAACGCTCACATAAGAGACGCAAAAGACGCAAAGGTCATAACAACAAAGGGCAAGTATCTTCAAAACCAAGCACAAGTGGTGTAAATGTGTCAGAGAAGAACCAAACCGCTCAACATTCTTCAAAGGAACAGAAGATGAAAGTTGAAGAAAAGGGAAGTAGCAGCATAAGCACATCTTTACAGCTGATGGAGGAAAAAAGCATGAATACATCAACATCAATGTCCCCAATTTTCCTTTCTACAGGAAGAAAATCTCCAAAAACGGAGGGTCATCCTAATGCTCTTAAGAACATCAAGAATTACACTCTCTTGCAGGCCTCTATCATTGATATCATGAATAGAAATGAAGGCACCGAACTTGGTCCATTGCGCAGGTCCTTTTCTGCATTGGAATTTCGCCTTGATCATCTTGAGAAGCTATCAAGTCTCTATGGACCAAACAAGAACTTAGGCCTTGGAATTTAA 1821 0.4014 MGCVNGKPDSPVHRRSNLNRLKKENAYGNPKRASSSSTSTIKPGRSYRDYSSNKIARAEDDRNKLRVAAHGYMDNNEKKKEKEKEEENKIEKCIATNDIGELIEEESKISEDSKKKKNKIAGYEFVEGWPKWLVDNIPKEVLSALVAKSADSYEKLDKVGRGTYSNVYKARDKDTGKIVALKKVRFDTSDSESIKFMGREIMILQKLDHPNVIKLRGLATSRMQYSLYLVFDYMQCDLSRIISRPDERLTESQIKCYMQQLLAGLQHCHERGIIHRDIKSSNLLIDRRGSLKIADFGLANVKHQDPLTNRVVTLWYRAPELLLGSTHYGYDIDLWSAGCLLAEMFVGRPFMPGRTEVEQLHLIFKLCGSPPDDYWIKMKLRSNYLPSQHYKPNYEDYFRGFPSSSMDLLTTLLHLDPACRGSAASALESEFFKTSPLACDPSALPVIYKEEDERSHKRRKRRKGHNNKGQVSSKPSTSGVNVSEKNQTAQHSSKEQKMKVEEKGSSSISTSLQLMEEKSMNTSTSMSPIFLSTGRKSPKTEGHPNALKNIKNYTLLQASIIDIMNRNEGTELGPLRRSFSALEFRLDHLEKLSSLYGPNKNLGLGI 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151638g00002 606 SUPERFAMILY Protein kinase-like (PK-like) 148 438 IPR011009 -
Stsc151638g00002 606 Pfam Protein kinase domain 153 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151638g00002 606 PANTHER CELL DIVISION PROTEIN KINASE 151 437 - -
Stsc151638g00002 606 Gene3D Transferase(Phosphotransferase) domain 1 236 473 - -
Stsc151638g00002 606 Coils Coil 76 96 - -
Stsc151638g00002 606 MobiDBLite consensus disorder prediction 29 47 - -
Stsc151638g00002 606 FunFam Putative serine/threonine-protein kinase 236 470 - -
Stsc151638g00002 606 Gene3D Phosphorylase Kinase; domain 1 141 235 - -
Stsc151638g00002 606 MobiDBLite consensus disorder prediction 450 509 - -
Stsc151638g00002 606 ProSitePatterns Protein kinases ATP-binding region signature. 159 182 IPR017441 GO:0005524
Stsc151638g00002 606 MobiDBLite consensus disorder prediction 469 489 - -
Stsc151638g00002 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Stsc151638g00002 606 SMART serkin_6 153 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151638g00002 606 MobiDBLite consensus disorder prediction 1 62 - -
Stsc151638g00002 606 MobiDBLite consensus disorder prediction 13 27 - -
Stsc151638g00002 606 FunFam probable serine/threonine-protein kinase At1g54610 140 235 - -
Stsc151638g00002 606 ProSiteProfiles Protein kinase domain profile. 153 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151638g00002 Stsc-Chr151638 4532 7166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151638g00002 147 463 Core Cell Cycle Gene Families AT5G10270 45.994 9.11e-98 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc151638g00002 Pkinase 3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151638g00002 K08819 - gmx:102667260 677.167