Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151638g00001 ATGGCGTCGTCCACTCTTGAGAGTAGCAGTGGCAACATGAACGAAGGAGCTTCCGATAAGAATCCTGCAGATCTCAACAAGGAAAAGAATCCATCATCATCCACCAATGATCCCAATCGCAGATGCACCTGCAAAAGGATTCAATGCCTGAAGTTCTACTGCAACTGCTTTAATTCTGGAAATCTTTGCAACGATTCTTGTTCGTGCAAAAATTGCTTGAATAATGAAGCAAATATGAAAGAGATAAAGAAGAACACACGGTTGCTTAATCCAGACGCGTTTGAATCCAAGATTGAGGCAAGAAACCGAAACGGTTGCCATTGCAGCAAGGCAGAGTGCATGAATAGTTACTGTGGTTGCGTCCGTAACGGAGTTGCTTGCACTCTTAACTGTCTATGTCACGGTTGCAAGAATAAATATGGAATCAAAGGCTCCTCTTCTCAGGCAAAGGAACAAGATTCTAATAATGGCAGCAAGAACGTGGAAACCATGGTTACTGGATCATCTTCTCAATCTCCTCACGCCAATTCCTTAACTCAGCTTTCTGAAACTTGTGCCGGTATGGATGATGATGATGAAATGGGCAACAGCAATGTGAATGATATCCCTATGCCAATGCCATCAAATCAAGTTGCTGAGGAGTTCACAACAGCCAAATAA 660 0.4288 MASSTLESSSGNMNEGASDKNPADLNKEKNPSSSTNDPNRRCTCKRIQCLKFYCNCFNSGNLCNDSCSCKNCLNNEANMKEIKKNTRLLNPDAFESKIEARNRNGCHCSKAECMNSYCGCVRNGVACTLNCLCHGCKNKYGIKGSSSQAKEQDSNNGSKNVETMVTGSSSQSPHANSLTQLSETCAGMDDDDEMGNSNVNDIPMPMPSNQVAEEFTTAK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151638g00001 219 PANTHER TESMIN/TSO1-RELATED 9 163 IPR028307 -
Stsc151638g00001 219 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 104 139 IPR005172 -
Stsc151638g00001 219 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 40 76 IPR005172 -
Stsc151638g00001 219 ProSiteProfiles CRC domain profile. 38 141 IPR005172 -
Stsc151638g00001 219 MobiDBLite consensus disorder prediction 201 219 - -
Stsc151638g00001 219 MobiDBLite consensus disorder prediction 144 219 - -
Stsc151638g00001 219 MobiDBLite consensus disorder prediction 1 39 - -
Stsc151638g00001 219 SMART CXC_2 101 142 IPR033467 -
Stsc151638g00001 219 SMART CXC_2 37 78 IPR033467 -
Stsc151638g00001 219 MobiDBLite consensus disorder prediction 1 19 - -
Stsc151638g00001 219 MobiDBLite consensus disorder prediction 144 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151638g00001 Stsc-Chr151638 2476 3308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151638g00001 40 181 CPP Transcription Factor Family AT3G22760 33.908 9.60e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc151638g00001 TCR 5.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151638g00001 - K21776 ahf:112771246 130.183