Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151628g00001 ATGTCATCATCATCATCATCCTCCTCCTCCTCCTCTTCATCTTCTTCCTCTTCTTCGACTACATTATCACTGGACCACATCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAACATTTGTGACACTGTTCTTGCTGTGAGTGTTCCCTGCACAAGCTTGTTCAAGACGGTGACGGTTCGATGCGGCCATTGCACCAATCTGCTGCCTGTCAACATGCGAGGCCTTCTTCTTCCTTCGCCTAATCAATTCCATTTCGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTGGAGGAGATTCCGAACCCGTCCCCGAATTTCTTCATGAACCAGACAAACACACCAAATGAATTCTCCATGCCTACTCGGACTGTAGTTGATGAGCTACCACGCCCTCCCATCATTAACAGACCTCCTGAGAAGAGACAGAGAGTACCATCTGCTTACAACCGCTTCATTAAGGACGAGATCCAACGCATTAAGTCTGTCAATCCTGATATAACCCACAGAGAGGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAGACTCTCAAGAAGACAAACGTGCGCCAGCAGGAAGGAGAAGAGGTTCTGATGAAAGATGCTGGGTTTTATGCTTCGGCTAATGTTGGTGTTTCACCCTACTGA 687 0.4789 MSSSSSSSSSSSSSSSSSSTTLSLDHIPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHFGHSFFSPTHNLLEEIPNPSPNFFMNQTNTPNEFSMPTRTVVDELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTLKKTNVRQQEGEEVLMKDAGFYASANVGVSPY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151628g00001 228 Pfam YABBY protein 29 191 IPR006780 GO:0007275
Stsc151628g00001 228 CDD HMG-box_SF 145 181 - -
Stsc151628g00001 228 FunFam Axial regulator YABBY 136 207 - -
Stsc151628g00001 228 SUPERFAMILY HMG-box 135 184 IPR036910 -
Stsc151628g00001 228 Gene3D High mobility group box domain 136 214 IPR036910 -
Stsc151628g00001 228 MobiDBLite consensus disorder prediction 1 23 - -
Stsc151628g00001 228 PANTHER PROTEIN YABBY 6-RELATED 14 203 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151628g00001 Stsc-Chr151628 4335 7347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151628g00001 40 226 C2C2-YABBY Transcription Factor Family AT4G00180 60.766 8.23e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc151628g00001 YABBY 5.3e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151628g00001 K25796 - gmx:100798441 403.29