Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151618g00003 ATGGTTGGCTTTTCATCATGCTCAAAATCAACAACAAGAAACAGCTCAAAGAAGGAGAAGAAGCAGCATGAACAAGAAGATGATGACGACGATGAGAAGAAGGGAAAAGGAAGAAGTTACATAGGAGTGAGGAAGAGGCCATGGGGAAAATTCGCAGCCGAAATTCGAGACACAACAAGGAACGGAAGAAGGGTTTGGCTTGGAACCTTTGATAGTGCTGAAGATGCTGCTTTGGCTTATGATCAAGCTGCATTCTCCATGAGAGGCTACTCTGCTGTTCTCAACTTTCCGTTCGAAAGTGTCAAAGATTCCTTGCAAGGAATCATCACCATGGAAGAATACAGCAAATCCAAATCCTCTTCTTCTTCTCCTTCTTGTTCACCTGCACTTGCACTCAAAGAGAGGAACTCCATCAAAAGAAAATTAGCATCCACATCATCATCAAAGGCCAACAAGAACAAGAACAAAAGAAAGGAATCATCAGAGGAATCTTCATCAACCGCTACTACTACTAATAATAAGAGTAGTGGTGATGTCATGATTTTGGAGGATTTGGGAGTTGAATATCTTGAGCATCTACTAACCATTTCTGAGTCTCATCATCAAATCACAACAACAAGCCCTAATTACTACTTGAGCAACAAAAATGATGCCTTGTCCCTCTCATCACCACCAGCACTAAGCTAA 687 0.4148 MVGFSSCSKSTTRNSSKKEKKQHEQEDDDDDEKKGKGRSYIGVRKRPWGKFAAEIRDTTRNGRRVWLGTFDSAEDAALAYDQAAFSMRGYSAVLNFPFESVKDSLQGIITMEEYSKSKSSSSSPSCSPALALKERNSIKRKLASTSSSKANKNKNKRKESSEESSSTATTTNNKSSGDVMILEDLGVEYLEHLLTISESHHQITTTSPNYYLSNKNDALSLSSPPALS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151618g00003 228 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Stsc151618g00003 228 MobiDBLite consensus disorder prediction 140 175 - -
Stsc151618g00003 228 MobiDBLite consensus disorder prediction 13 38 - -
Stsc151618g00003 228 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Stsc151618g00003 228 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Stsc151618g00003 228 PANTHER DNA-BINDING DOMAIN 18 195 IPR044808 GO:0003700|GO:0009873
Stsc151618g00003 228 FunFam Ethylene-responsive transcription factor 2 38 99 - -
Stsc151618g00003 228 CDD AP2 40 97 IPR001471 GO:0003700|GO:0006355
Stsc151618g00003 228 MobiDBLite consensus disorder prediction 1 41 - -
Stsc151618g00003 228 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Stsc151618g00003 228 Gene3D AP2/ERF domain 39 99 IPR036955 GO:0003700|GO:0006355
Stsc151618g00003 228 ProSiteProfiles AP2/ERF domain profile. 39 97 IPR001471 GO:0003700|GO:0006355
Stsc151618g00003 228 SMART rav1_2 39 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151618g00003 Stsc-Chr151618 10874 11681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151618g00003 38 198 AP2-EREBP Transcription Factor Family AT3G23240 50.000 6.00e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151618g00003 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151618g00003 K14516 - gmx:100812569 159.073