Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151618g00002 ATGGAAGAGGGAGACTCAAAAAAGGCTAAGGCTGAAGTTGAATCAACAAAAGAAACTCGATATAGAGGGGTCCGACGGCGGCCATGGGGGAAGTTTGCGGCCGAGATTAGGGATTCAAATCGGCATGGTGCTCGAGTGTGGCTCGGGACATATTTGTCGGCTGAGGAGGCTGCAAGGGCTTATGACAAGGCTGCCTTTGAAATGAGAGGTGCTTCGACCATACTCAATTTTCCAAATGAGTATCTCAATATCAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATTCATGCAATGATCTTGGTTCCACTATAAACTACTCCTCATCATCTTCTTTGGCTTCAATAATTCCAAGTTCATCTTCATTGGTTACTACAAATACTGAGAATGATAAACAAGTTATTGAGTTAGAGTGTATGGATGATAACTTGCTAGAGGAGCTTCTTGCTTGTGATGAGAGTGAAAAGAATAAAGAATCCCCTAGTAAAATGTAG 519 0.3776 MEEGDSKKAKAEVESTKETRYRGVRRRPWGKFAAEIRDSNRHGARVWLGTYLSAEEAARAYDKAAFEMRGASTILNFPNEYLNINNNNNNNNNNNNNNNNNNNNSCNDLGSTINYSSSSSLASIIPSSSSLVTTNTENDKQVIELECMDDNLLEELLACDESEKNKESPSKM 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151618g00002 172 MobiDBLite consensus disorder prediction 1 21 - -
Stsc151618g00002 172 PANTHER DNA-BINDING DOMAIN 8 162 IPR044808 GO:0003700|GO:0009873
Stsc151618g00002 172 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Stsc151618g00002 172 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Stsc151618g00002 172 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Stsc151618g00002 172 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Stsc151618g00002 172 MobiDBLite consensus disorder prediction 86 107 - -
Stsc151618g00002 172 Pfam AP2 domain 19 70 IPR001471 GO:0003700|GO:0006355
Stsc151618g00002 172 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Stsc151618g00002 172 FunFam Ethylene-responsive transcription factor 2 19 79 - -
Stsc151618g00002 172 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Stsc151618g00002 172 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151618g00002 Stsc-Chr151618 3333 3851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151618g00002 17 164 AP2-EREBP Transcription Factor Family AT3G23230 47.297 2.03e-36 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc151618g00002 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151618g00002 - - gmx:100810414 147.132