Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151614g00006 ATGCTATGGAGATTGGCCATAGTAGGGATCCCATTCACAATTCTTCTTATAATCCCTGGCTTCATTTATGGCAAGACATTAATGGGATTAGCAAGAAAAATGAGAGAAGAGTATAACAAAGCAGGTTCAATAGCTGAACAAGCAATATCTTCAATAAGAACAGTATATTCATATGTGGGGGAAAATGAGACCATAAATGCATTCTCTAATGCTCTTGAAGGGTCAATGAGTTTGGGACTTAAACAAGGGTTGGCAAAAGGTTTAGCCATTGGAAGCAACAATGGTATTGTTTTTGGAATATGGTCTTTTATGTGCTATTATGGAAGCAGATTGGTCATGTACCATGGTGCTAAAGGAGGCACAGTTTTTTCAGCTGGAGCAGCCATCACTGTTGGTGGATTGGCACTAGGTTCTGGTTTATCAAACATGAAATACCTGAGCGAAGCAAGTTCAGCAGCGGAACGCATAAGGCAAGTCATAGACAGAGTTCCGGAGATTGATTCTGACACCGACGGAAAAGTCCTCGGAAGCGTTCGAGGGCAAGTAGAATTCCAAAACGTGGATTTCGCATACCCGTCGAGACCAGAGACTATTATTTTGAATGGTTTTTGCCTCAAGATTCCGGCGGGGAAGACGGTGGCGTTGGTGGGAGAGAGTGGTTCTGGAAAATCCACCATCATTGCGCTTTTGCAAAGGTTTTATGATCCTCTTGGAGGGCAAATAAAATTTGATGGTGTTGCTATTAATAAGTTGCAGCTTAAGTGGTTTAGATCACAGATGGGATTGGTGAGTCAAGAGCCAGCACTATTTGCCACCAGCATCAAAGAGAACATACTGTTTGGGAAGGAAGATGCAACAGAAGCTGAAGTGATTGAGGCTGCAAAAGCTTCCAATGCTCATAATTTTATTTCCATGCTTCCTCAGGGCTATGAAACCCAGGTGGGTGAGAGAGGAACTCAAATGTCAGGTGGACAAAAACAAAGAATTGCAATTGCTAGGGCAATAATTAAGAAACCAAGAATGCTTCTTCTTGATGAAGCAACCAGTGCACTTGATTCCCACTCCGAGCAAATTGTCCAAAGAGCTCTTGACCAGGTGTCCATTGGCTGCACCACCGTCGTCGTCGCCCACCGCCTTTCCACGATTCGCAATGCCAACATCATTGTCGCCATGCGAGCTGGAAAGGTGGTGGAGATGGGCACCCACGACGAACTCCTCTTGAATCATGATGGACTCTACTCCTCCATGGTTCGTCTCCAACAAACTGAGAAATCAGAAACAATAGAATCTGATGCTAGTGCTGTTGATGCTCCTTCTTCTTCTATTTCGGCTAGTAACGACGTTGCTGATGTTGATGACCACTCATGTTTCACTCATACAGATGATGAGAACGAGAACATTGTAAAGGTGAAAGACGAGGAGGAGGAGAATAAGAAGGCGCCGCCGTCGTTCTGGAGACTGGCGGCGCTGAACCTTCCAGAGTGGAAGGAAGCAGTTATAGGGTGTTTGAATGCTATGGTATTCGGTGGTGTTCAACCGATGTACACTCTGGTTATGGGGTCGATGATGTTTGTGTATTTCGACACCGATCATGAAGAGATAAAGAAGAAGGCGAGGGTTTACTCGCTTTGCTTTTTGGGTCTTTTTCTCTTGTCTTTGATTGTGAACATTGGGCAGCATTATAGTTTTGCTTATATGGGAGAGTGCTTGACCAAAAGAATTAGAGAGACCATGTTTGCAAAGATACTCACCTTTGAAATTGCTTGGTTTGATCGTCATCAAAATTCTACTGCTGCTGTTTGCTCTAGGCTTGCCAAGGATGCAAATGTTGTGAGATCTTTAGTTGGAGACAGGATTGGTTTGGTGGTTCAGACAGTGTCAGCAGTGGTAACAGCTTTCACTTTGGGTTTGGTCATTGCATGGAGACTCGCCATTGTTATGATATGTGTTCAGCCCCTTATGGTCGCATGCTTCTACACAAAGCGTGTCCTTATCAAGACCATGTCCAAAAAGGTTGCAAAGGCGCAAGAAGAAAGTAGCAAGCTTGCAGCTGAAGCCGTTTCAAACCTCCGAACAATCACAGCCTTCTCTTCTCAAAACAGAATCTTGAAGATGCTTGAAAATGCTCAAGAAGGACCAAGACGGGAGAATCTCCGGCAATCGTTTTACGCCGGAATCGGCCTTGCATGTTCCCAAACCATAACAACTTGTGCTATGATTCTTAACTATTGGTACGGTGGCCAATTGGTGGCTCATGGCTACATCACCACAAAAGCATTGTTTCAAAGTTTCATGGTTATTGTCAGCACAGCCAGAGTCATTGCCGAGGCCGGCAGCATGACATCCGATCTCGCCAAAGGCGCCGACGCCGTGCGGTCCATTTTCGCCATCTTAGACAGGACAACAAAGATCCTGGCTGACGACGGCGAAAACGGCCATATACCCAAAAACATAACGGGCAAAATAGAATTCCAAGACGTGTATTTTTCTTATCCGACTAGACCGAACGTCACTATCTTCAAATCTTTTTCAATGAAGATAGAATCGGGAAAGTCAACGGCATTGATTGGTCAAAGCGGATCTGGAAAGTCAACGATTATAGCTCTAATTGCAAGATTCTATGATCCTTTAAAAGGGTACGTAACAATTGACAATATAAATGTAAAGTCATATAATCTGAAAGAATTAAGGAGGCACATTGCAATTGTGAGTCAAGAACCAACATTGTTCAATGGAACCATAAGAGAGAACATTGCTTATGGATCCAACGGTGTCGATGAGTCAGAGATCATAGAGGCATCAAAGTTGGCCATGGCACATGATTTTGTAACGGGATTGAAAAACGGTTATGACACGTGGTGTGGGGAGAAGGGGTTACAGCTGTCAGGGGGTCAAAAGCAAAGGATAGTGATCGCAAGGGCTATATTGAAAAATGCAAGAGTTTTGTTGTTGGATGAGGCAACTAGTGCACTTGATATGAAATCTGAGAAGGTTGTTCAGGAAGCACTAGAGAGGGCTATGGTGGAGAGGACCAGCGTGATCGTGGCGCATAGGTTGTGTACCATAAAGAAATGTGATGTTATTGCGGTTTTGGAGAAGGGGAAGGTTGTTGAAAGTGGGACCCACTCTTCTTTGATGGCTAAAGGAGCTGGGGGAGCTTATTTCAACTTTGTTACTCTTCAAACTACTACTGGAACTACTGTGTCTAATTAA 3213 0.4407 MLWRLAIVGIPFTILLIIPGFIYGKTLMGLARKMREEYNKAGSIAEQAISSIRTVYSYVGENETINAFSNALEGSMSLGLKQGLAKGLAIGSNNGIVFGIWSFMCYYGSRLVMYHGAKGGTVFSAGAAITVGGLALGSGLSNMKYLSEASSAAERIRQVIDRVPEIDSDTDGKVLGSVRGQVEFQNVDFAYPSRPETIILNGFCLKIPAGKTVALVGESGSGKSTIIALLQRFYDPLGGQIKFDGVAINKLQLKWFRSQMGLVSQEPALFATSIKENILFGKEDATEAEVIEAAKASNAHNFISMLPQGYETQVGERGTQMSGGQKQRIAIARAIIKKPRMLLLDEATSALDSHSEQIVQRALDQVSIGCTTVVVAHRLSTIRNANIIVAMRAGKVVEMGTHDELLLNHDGLYSSMVRLQQTEKSETIESDASAVDAPSSSISASNDVADVDDHSCFTHTDDENENIVKVKDEEEENKKAPPSFWRLAALNLPEWKEAVIGCLNAMVFGGVQPMYTLVMGSMMFVYFDTDHEEIKKKARVYSLCFLGLFLLSLIVNIGQHYSFAYMGECLTKRIRETMFAKILTFEIAWFDRHQNSTAAVCSRLAKDANVVRSLVGDRIGLVVQTVSAVVTAFTLGLVIAWRLAIVMICVQPLMVACFYTKRVLIKTMSKKVAKAQEESSKLAAEAVSNLRTITAFSSQNRILKMLENAQEGPRRENLRQSFYAGIGLACSQTITTCAMILNYWYGGQLVAHGYITTKALFQSFMVIVSTARVIAEAGSMTSDLAKGADAVRSIFAILDRTTKILADDGENGHIPKNITGKIEFQDVYFSYPTRPNVTIFKSFSMKIESGKSTALIGQSGSGKSTIIALIARFYDPLKGYVTIDNINVKSYNLKELRRHIAIVSQEPTLFNGTIRENIAYGSNGVDESEIIEASKLAMAHDFVTGLKNGYDTWCGEKGLQLSGGQKQRIVIARAILKNARVLLLDEATSALDMKSEKVVQEALERAMVERTSVIVAHRLCTIKKCDVIAVLEKGKVVESGTHSSLMAKGAGGAYFNFVTLQTTTGTTVSN 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151614g00006 1070 PANTHER ABC TRANSPORTER B FAMILY 2 511 IPR039421 -
Stsc151614g00006 1070 SMART AAA_5 849 1021 IPR003593 GO:0016887
Stsc151614g00006 1070 SMART AAA_5 209 403 IPR003593 GO:0016887
Stsc151614g00006 1070 ProSitePatterns ABC transporters family signature. 961 975 IPR017871 GO:0005524|GO:0016887
Stsc151614g00006 1070 Pfam ABC transporter 201 349 IPR003439 GO:0005524
Stsc151614g00006 1070 Gene3D ABC transporter type 1, transmembrane domain 3 427 IPR036640 GO:0005524|GO:0016020
Stsc151614g00006 1070 Gene3D - 812 1067 IPR027417 -
Stsc151614g00006 1070 SUPERFAMILY ABC transporter transmembrane region 3 167 IPR036640 GO:0005524|GO:0016020
Stsc151614g00006 1070 Coils Coil 665 685 - -
Stsc151614g00006 1070 CDD ABC_6TM_Pgp_ABCB1_D2_like 488 804 - -
Stsc151614g00006 1070 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 182 418 IPR003439 GO:0005524
Stsc151614g00006 1070 FunFam ABC transporter B family member 4 172 427 - -
Stsc151614g00006 1070 CDD ABC_MTABC3_MDL1_MDL2 182 420 - -
Stsc151614g00006 1070 FunFam ABC transporter B family member 4 812 1066 - -
Stsc151614g00006 1070 CDD ABC_MTABC3_MDL1_MDL2 822 1058 - -
Stsc151614g00006 1070 FunFam Putative ABC transporter B family member 8 462 809 - -
Stsc151614g00006 1070 SUPERFAMILY ABC transporter transmembrane region 486 799 IPR036640 GO:0005524|GO:0016020
Stsc151614g00006 1070 Pfam ABC transporter transmembrane region 2 129 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151614g00006 1070 Pfam ABC transporter transmembrane region 500 770 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151614g00006 1070 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 822 1058 IPR003439 GO:0005524
Stsc151614g00006 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 811 1061 IPR027417 -
Stsc151614g00006 1070 Gene3D ABC transporter type 1, transmembrane domain 465 809 IPR036640 GO:0005524|GO:0016020
Stsc151614g00006 1070 MobiDBLite consensus disorder prediction 425 446 - -
Stsc151614g00006 1070 Gene3D - 172 421 IPR027417 -
Stsc151614g00006 1070 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 148 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151614g00006 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 420 IPR027417 -
Stsc151614g00006 1070 Pfam ABC transporter 841 989 IPR003439 GO:0005524
Stsc151614g00006 1070 ProSitePatterns ABC transporters family signature. 321 335 IPR017871 GO:0005524|GO:0016887
Stsc151614g00006 1070 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 505 786 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151614g00006 Stsc-Chr151614 28413 34902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151614g00006 2 1068 Calmodulin-binding Proteins AT2G36910 44.608 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151614g00006 K05658 - gmx:100807709 1438.32