Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151612g00003 ATGGATCATGGTCATGGAAGTCAACCCTCATCTTCAACCACCAACAAGGTTGAAAGAAGGCTCATTGAGAAAAACAGAAGGAACCACATGAAGATGCTTTACTCCAAACTCAACTCTCTTCTCCCTAACTATAATCCCAAGGAAGCGTTGCCACTGCCGGATCAAGTGGACGAAGCTATAAACTACATAAAGAACTTAGAGGAGAAGGTGAAGATGGCGAAGGAGAAGAAAGAGGGCTTATTGGGAAGGAAAAGGACACGTGGCGTTGGCGGCGATGGTAGTGGTTGCAGCAGCACGAAACCGCCACAACTTGAAGTTCATGAAATGGGTTCATGTCTTGAAATTGTAATGACATGTGGATTGGAGAACCAGTTCATATTCTATGAGATTATTCGCATACTCAATCAAGAGAACATTGATGTTAAGACTTCTAATTCCACCCTCCAAGGAGATTCCATGCTCCATGTTATCCATGCAGAGGTATATATGCTATCAAAGATATTTAGTGATGTATAG 516 0.4244 MDHGHGSQPSSSTTNKVERRLIEKNRRNHMKMLYSKLNSLLPNYNPKEALPLPDQVDEAINYIKNLEEKVKMAKEKKEGLLGRKRTRGVGGDGSGCSSTKPPQLEVHEMGSCLEIVMTCGLENQFIFYEIIRILNQENIDVKTSNSTLQGDSMLHVIHAEVYMLSKIFSDV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151612g00003 171 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 82 IPR036638 GO:0046983
Stsc151612g00003 171 Coils Coil 56 83 - -
Stsc151612g00003 171 SMART finulus 20 72 IPR011598 GO:0046983
Stsc151612g00003 171 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 66 IPR011598 GO:0046983
Stsc151612g00003 171 Gene3D - 5 87 IPR036638 GO:0046983
Stsc151612g00003 171 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Stsc151612g00003 171 FunFam Transcription factor bHLH162 5 90 - -
Stsc151612g00003 171 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151612g00003 Stsc-Chr151612 24074 24926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151612g00003 8 161 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.952 1.06e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151612g00003 HLH 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151612g00003 - - gmx:100817883 211.075