LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151612g00001	ATGTTCCATCTATCCACTGAATCTGATAGCATCTTGCCAGGGCAGAGACTATCAGGAAACCAAACTCTAGTTTCCTATGGAGAATACTTTGAAATGGGTTTCTTCTCTCCATCATCAAGTAACAACTACTCTCGCAATTATTACATAGGCATATGGTATAAAGGGTTGCCACAAAGAACAGTTGTTTGGGTAGCCAACAGGGATCATCCTGTGTCTGATCCATATTCTTCATGGTTAGAACTTGATAAACATGGCAATCTATCTCTGTATACCTCCCATGGTCATGCAGTTTGGTCAACAAACTCTTACTTTATTTTGGGTCCTTCGGATTCCACAGCTGCTTATCTCCGGGAAGATGGAAACTTTATTATAAGCACCTCATTTGACGAATATGGATGGCAAAGCTTCGATTACCCAACTGATACATGGCTTCCTAATGCGCATTGGGGATATGACAATCAAAGAGGTATTAAAAGGGTTCTGAAATCTTGGCTAGCTGCAAGTAATCCAGCAACTGGCCACTTCTCAGCTGAGGTAACTAGAGCTTCTGAATATTTACTTGAGGTTCAGTTGTTACTAAATGATAGTTTTATTGAGTCTAAATTCTGCACTGAACCGTTCACTGGAAACATAGATTCTTCATCCGAATACTTGTATTTTGTGCTCTCATGTGACCATGATATCTCATTATGTCGTATTAGATATGTGTTAGATGTATCTGGAAAGCTCAAACTTTTAGGGTTGTTAGACGATACGAAAGAATGGGTTAACATCCTCATGGACCACCAAAAATGTGACTTTCACGGTGGAAATGAGGATACAAGAGTGAATGCCAAACACAGTGGAAATGAGGATACAAGAGTGAATGCCAAACACAGTGCAAGGAAGAATGCTACGTGTGTGGTTGTGGCAGCAGCAATTTGGGTTGCTAGTGTGTTGGTTGCCATTGCCATTTTGCTCATAATGCTGTGGAAGAGAGGCACTACCACTTCATCTAATAAGGCAATGGACGGAGATACATTGAAGTTGTACAAGTACAGAGATTTGAGAAAAGCAACTAGAAACTTCAAACACAAGCTTGGAAAGGGTGGTTTCAGCACTGTTTACAAAGGGGAATTCCCTTATTCCGTTTTCGTAGCTGTCAAGGAACTTCAAGGACACTTTCAAGAAGAGAAACAACTTAGAGCAGAACTCAACACGGTAGGGCTGATTCAGCACAAGAATCTTGTTCGCTTACTTGGATTTTGCTTAGAAGGTTCCAAGAGATTCATAATTTATGACTATATGGAAAATGGTTCTCTAGAATCTCATTTATTTAAGGAGGATTCCAATGTCTTAGAATGGGGAACTAGATACAATATCGCTCTTGGGACTGCCAAGGGTTTAGCTTATCTACACGAGCATTGTAGAGACTGCATCATTCATTGTGACATCAAGCCGGAGAACATTTTGTTGGATGCTGATTTCAACCCTCAAGTTGCGGATTTTGGCTTGGCAAAGCTTCTTGGCCGAGACTTCAGTCGGGTTCATACAACGATGAGAGGAACAAGAGGCTATCTAGCACCAGAGTGGTTCTCTGGAGTCCCAGTCACAGCAAAAGTTGATGTGTATAGCTATGGTCAAGTCCTGTTTGAGATCATTTCAGGTAGAAGGAACATGGATCTAGCAAATGATGATCTAGCTAGTTATTTCCCAGCAATTGTTTTCAATACATTGAACAATGGGGAGGATGTTCTGGCATTGGTAGATTCCAAACTGCAAGGCGAATTCAGTGCAGAGGAGGTTACTAGAGCATGCAAGGTTGCTTGTTGGTGCATTCAAGATGATGAGAATGATAGACCAACAATGAAAGAGGTTGTTCAAGCTTTGGAAGGATATCTTGATGTAGGTATTCCACCGATTCCACGGTTTTTCCTGTCCTTAGCAGAACCTTCTGTCCGAAAAGCTGATCTGAAGGACAGCAAGGATTACAGTACATCAGGCACACTACCTTCAAGTTTCAGTTTTCAGCCATCAGCTCAGTCTGTTCAAGATGTACTATAA	2043	0.4126	MFHLSTESDSILPGQRLSGNQTLVSYGEYFEMGFFSPSSSNNYSRNYYIGIWYKGLPQRTVVWVANRDHPVSDPYSSWLELDKHGNLSLYTSHGHAVWSTNSYFILGPSDSTAAYLREDGNFIISTSFDEYGWQSFDYPTDTWLPNAHWGYDNQRGIKRVLKSWLAASNPATGHFSAEVTRASEYLLEVQLLLNDSFIESKFCTEPFTGNIDSSSEYLYFVLSCDHDISLCRIRYVLDVSGKLKLLGLLDDTKEWVNILMDHQKCDFHGGNEDTRVNAKHSGNEDTRVNAKHSARKNATCVVVAAAIWVASVLVAIAILLIMLWKRGTTTSSNKAMDGDTLKLYKYRDLRKATRNFKHKLGKGGFSTVYKGEFPYSVFVAVKELQGHFQEEKQLRAELNTVGLIQHKNLVRLLGFCLEGSKRFIIYDYMENGSLESHLFKEDSNVLEWGTRYNIALGTAKGLAYLHEHCRDCIIHCDIKPENILLDADFNPQVADFGLAKLLGRDFSRVHTTMRGTRGYLAPEWFSGVPVTAKVDVYSYGQVLFEIISGRRNMDLANDDLASYFPAIVFNTLNNGEDVLALVDSKLQGEFSAEEVTRACKVACWCIQDDENDRPTMKEVVQALEGYLDVGIPPIPRFFLSLAEPSVRKADLKDSKDYSTSGTLPSSFSFQPSAQSVQDVL	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151612g00001	680	ProSitePatterns	Protein kinases ATP-binding region signature.	360	382	IPR017441	GO:0005524
	Stsc151612g00001	680	Gene3D	-	2	136	IPR036426	-
	Stsc151612g00001	680	Gene3D	Transferase(Phosphotransferase) domain 1	429	629	-	-
	Stsc151612g00001	680	SMART	blect_4	14	139	IPR001480	-
	Stsc151612g00001	680	ProSiteProfiles	Bulb-type lectin domain profile.	8	137	IPR001480	-
	Stsc151612g00001	680	Pfam	D-mannose binding lectin	60	164	IPR001480	-
	Stsc151612g00001	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	473	485	IPR008271	GO:0004672\|GO:0006468
	Stsc151612g00001	680	PANTHER	OS07G0415500 PROTEIN	7	180	-	-
	Stsc151612g00001	680	ProSiteProfiles	Protein kinase domain profile.	354	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151612g00001	680	CDD	B_lectin	17	139	IPR001480	-
	Stsc151612g00001	680	FunFam	Serine/threonine-protein kinase	429	631	-	-
	Stsc151612g00001	680	CDD	STKc_IRAK	360	625	-	-
	Stsc151612g00001	680	SUPERFAMILY	alpha-D-mannose-specific plant lectins	46	141	IPR036426	-
	Stsc151612g00001	680	SMART	serkin_6	354	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151612g00001	680	SUPERFAMILY	Protein kinase-like (PK-like)	336	624	IPR011009	-
	Stsc151612g00001	680	Pfam	Protein kinase domain	356	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151612g00001	680	FunFam	S-receptor-like serine/threonine-protein kinase	325	428	-	-
	Stsc151612g00001	680	Gene3D	Phosphorylase Kinase; domain 1	321	428	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151612g00001	Stsc-Chr151612	7477	18506	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151612g00001	344	633	Receptor kinase-like Gene Family	AT5G20050	43.648	1.35e-70	235

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Stsc151612g00001		Pkinase	1.8e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151612g00001	-		-	ahf:112737678	1005.36