Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151602g00007 ATGCATGCACATCCTCCCAAACCAAAAATAATAATGTCTGTGAGTCCACCAAGACAAAGAAGCAACAACAACATCAATGGATTCCAACTATACTGGTGCTTCCAGTGCAACCGCATGGTCAGAGCCGCACAAGATAACAACCCATCATGCCCACGCTGCTTTGGCCAATTCATCCAAGAAATCAACATGCCAACACCAAGACTCTTCCTTGATTTCACCCCCAACGATCCTTCTCCACACCCCCGTCTTCTAGAAGCTCTCTCTCTCATGCTCGATCCCGCCTTCCAACAACCCCGCCGCCGCCCCCGCATCCGCCGCCGCCAACCTTCCGACACGCCCGACCCCAATCCTACAACTCGTCCCCGGACCTGGATCATTGTCCATCCCATCGGTGCTTCCCCAGAGGAGCTCGAATCCATGGTTCCCCCGCCGCGCCGCGACCGTCCGGTGGTGCCGCGCGGGGTGGACTCGAGGGATTACTTTCTTGGTCCTGGATTAAACGAGCTGATCGAGCAGATTACAGAGAACGATAGGCCGGGTCCGGCGCCGGCGGCGGAGAGAGCGATAAGGGGGATACCGCGGGTGAAGATAGAGGGGCATCATCTGAAGGAGAATTCGCAGTGTCCGGTTTGTCAGGAAGAGTTTGAGGTTGGTGAGGAAGTGAGGGAGCTTCCGTGTAAACATGTTTATCACTCTGATTGCATTGTTCCGTGGCTCAGGCTTCATAATTCTTGCCCCGTTTGCCGCCATGAGGTGCCCGATCACGATGATGATGATGATGAGTATGTTGGTGAGGGCAGGTTTCGGAGGTGCTTGAGGTGGACGAGGCTTTCTTCTCTTTGGCCCTTCCATCGCCGTCCACGTGTTCATCCTGCTGATCCAGGAGCAGGAACAGAAGGAGGAGGGATTAATAATAATAATGCTTCTGCTTCTGCTTCTCCCCGTGGTGATCATTCAAGTTAA 963 0.5421 MHAHPPKPKIIMSVSPPRQRSNNNINGFQLYWCFQCNRMVRAAQDNNPSCPRCFGQFIQEINMPTPRLFLDFTPNDPSPHPRLLEALSLMLDPAFQQPRRRPRIRRRQPSDTPDPNPTTRPRTWIIVHPIGASPEELESMVPPPRRDRPVVPRGVDSRDYFLGPGLNELIEQITENDRPGPAPAAERAIRGIPRVKIEGHHLKENSQCPVCQEEFEVGEEVRELPCKHVYHSDCIVPWLRLHNSCPVCRHEVPDHDDDDDEYVGEGRFRRCLRWTRLSSLWPFHRRPRVHPADPGAGTEGGGINNNNASASASPRGDHSS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151602g00007 320 CDD RING-H2_RNF126-like 207 249 - -
Stsc151602g00007 320 Pfam zinc-ribbon 29 61 IPR039525 GO:0061630
Stsc151602g00007 320 SUPERFAMILY RING/U-box 189 255 - -
Stsc151602g00007 320 MobiDBLite consensus disorder prediction 286 320 - -
Stsc151602g00007 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 255 IPR013083 -
Stsc151602g00007 320 SMART ring_2 208 248 IPR001841 -
Stsc151602g00007 320 MobiDBLite consensus disorder prediction 300 320 - -
Stsc151602g00007 320 ProSiteProfiles Zinc finger RING-type profile. 208 249 IPR001841 -
Stsc151602g00007 320 MobiDBLite consensus disorder prediction 92 122 - -
Stsc151602g00007 320 Pfam Ring finger domain 207 249 IPR001841 -
Stsc151602g00007 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 99 253 - -
Stsc151602g00007 320 FunFam E3 ubiquitin-protein ligase RING1-like 171 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151602g00007 Stsc-Chr151602 29783 31376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151602g00007 147 261 C3H Transcription Factor Family AT5G01980 41.880 1.63e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151602g00007 K11982 - gmx:100787399 320.857