Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151602g00004 ATGGTTAAGGCAGAACAGAAGATCCAAAGAGACACATCATCATCATCAAAGGGAATGGCAGCAAGTTGTTCGAATAATAATAAGCAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGATCATGGGTTTCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGTTCATATTCAACTGCTGAAGCTGCTGCTAGAGCCTATGATGCTGCACTTCTATGTCTCAAAGGCTCTTCTGCAAATCTCAATTTCCCATCATTAACTTCTTCTAATTACATCAACATCATCCCTCATCATCAACATTCTTCTTCTTCTTCTGCTCCTATGTCTCCAAAATCAATACAAAGAGTTGCTGCTGCTGCTGCTGCTAATTGCAGCTTTGTTGATGACATCAACAATGCTAATGCTACAACACCTTCTTCTTCTTCTTCTTATTCTTCATCATCATCATCATTGGTTTCATCACCATCAATGGTTTCTTCTCCCTCTGAACAAACTGATGATGATGTTGCTGATGCATCACTCATGTCTTCTACTACTCCTAGCTGTGATGAATCCATGGCTATGAATATGATGGAACCTTGGTACAACACCTTTGATGATGCTCTTGATCAGATGCTGAGTGGTGCTGCTGCTGGTTTCTTTGATCTTGATTCATCTCACCTTCTTGCTGATCTTTATGAAGAAGAAACTGACATTCGTTTGTGGAGTTTCTGCTAG 729 0.4047 MVKAEQKIQRDTSSSSKGMAASCSNNNKQKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSLTSSNYINIIPHHQHSSSSSAPMSPKSIQRVAAAAAANCSFVDDINNANATTPSSSSSYSSSSSSLVSSPSMVSSPSEQTDDDVADASLMSSTTPSCDESMAMNMMEPWYNTFDDALDQMLSGAAAGFFDLDSSHLLADLYEEETDIRLWSFC 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151602g00004 242 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Stsc151602g00004 242 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Stsc151602g00004 242 PIRSF PTI6 120 241 IPR017392 GO:0003700
Stsc151602g00004 242 PIRSF PTI6 1 142 IPR017392 GO:0003700
Stsc151602g00004 242 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Stsc151602g00004 242 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Stsc151602g00004 242 MobiDBLite consensus disorder prediction 1 32 - -
Stsc151602g00004 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 188 - -
Stsc151602g00004 242 FunFam ethylene-responsive transcription factor ERF014-like 30 90 - -
Stsc151602g00004 242 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Stsc151602g00004 242 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Stsc151602g00004 242 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Stsc151602g00004 242 MobiDBLite consensus disorder prediction 140 188 - -
Stsc151602g00004 242 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Stsc151602g00004 242 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151602g00004 Stsc-Chr151602 20853 21975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151602g00004 1 241 AP2-EREBP Transcription Factor Family AT1G21910 43.939 2.88e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151602g00004 AP2 5.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151602g00004 - - gmx:100813615 231.106