Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151601g00004 ATGGGAAGGGGAAGAAGATTAAAAAAGCTACATCTTAGCAAGATTTACACTTTCACCTGTGGTAAAAAATCACTATTCAATGATGAACATTCTCGAATTGGAAGTGTTGGCTTTTCAAGGGTGGTGTTGGTGAATGAGTTCTCAGAGAACTTTAACAATACTTGTGAGAACAATAATAACAACAACTATGCAGATAATGTTGTGCGTTCTACAAAATACACGGTTGCAAATTTCCTACCAAAATCACTATTTGAGCAGTTTAGGAGAGTGGCGAACTTCTTTTTCTTGGTGACTGGTGTATTATCCTTTACCAAACTTGCACCTTATACAGCTGTGAGTGCTATCTTGCCCTTGATTGTTGTCATTACTGCCACAATGGTCAAAGAGGGTATCGAAGATATGCGTCGAAAAAAGCAGGATATTGAGGTAAACAATCGAATAATTGAAGTGCATAAAGGGGATGGAACTTTTGAACGTACTGAGTGGAAAAACCTAAAGGTGGGAAACATAGTGAGAGTTGAAAAGGATGAGTTCTTCCCTGCTGACCTACTACTTCTTTCATCAAGTTATGAGGATGCAGTATGTTATGTTGAGACCATGAACTTGGATGGAGAGACAAACTTGAAGTTGAAACAAGGCTTGGAAGTAACTTCTTCCTTACATGAGTACGACTTTAGTGATTTTAAAGCTTCTATCAAATGTGAAGACCCCAATGCAAACTTGTATTCATTTGTTGGAAGCATGGAGTTTAAGGAGCAAGTGCATGCACTTTCTCCCCAACAACTTCTCCTAAGAGATTCTAAACTCCGTAACACAGAATACATATTTGGAGCTGTCATCTTCACAGGGCATGACACAAAGGTTATCCAAAATTCAGTTTCTCCTCCTTCAAAACGAAGCAAGATTGAAAGGAAGATGGATAAAGTTATTTATGTCTTATTTTTCATCTTATTCCTAATGTCATTTGTTGGATCAGTTTTCTTTGGCATTACAACTAAAGAAGACTTGAAAAATAATGTGATGAAAAGATGGTATCTAAGACCAGATGATTCTACAATTTTCTTTGATCCTAAAAGAGCCCCTGCAGCTGCTTTCTTCCATTGTTTGACGGCCTTAATGTTATATAGCTTCTTTATTCCGATCTCGTTGTACGTATCCATAGAAGTTGTTAAAGTCCTTCAAAGCATTTTCATAAACCAAGATATTAATATGTACCATGAAGAAACAGACAAACCGGCCCATGCTGTTACTTCAAACTTAAATGAGGAACTTGGCCAAGTTCACACGATTCTTTCTGATAAAACTGGAACTCTTACTTGCAATTCAATGGAGTTCATCAAATGTTCCATTGCTGGAGTAGCTTACGGTCGTGGGGTCACAGAGGTTGAGAAGGCCATGAATAGAAGAAATGGATTAGAATTTGATGACATAATGAATTCTCCAGATAGAAAGGCACCCATCAAAGGTTTTAATTTTACAGACGAAAGAATAATGGACGGAAATTGGGTTAATGAACCTCATGCAAATGTTATTCGAAATTTTTTTCGCTTATTGGCAATTTGTCATACAGCTATACCAGAAGTTGATGAAGACACCGGAAAAGTCTCTTATGAGGCTGAATCTCCAGATGAAGCAGCATTCGTGATTGCAGCAAAAGAAGTTGGCTTTGAATTTTACAAAAGGACCCAAACAAGTTTATCAATATTTGAGTTGGATCCAGTTTCTCAACAAAAAGTTAAAAGGACATACTGCCTTCTCAATGTTTTAGAATTCAATAGCACAAGAAAGCGGATGTCTGTCATAGTGAAAGATGAAAGGGGAAGAATTTTGTTACTTTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGACTTGCTAACAATGGAAGAGAGTTTGAAGAGAACATCTTGGAACATGTACATGAATACGCTGACGCAGGTTTAAGGACATTACTACTAGCGTTCCGTGAACTTGATGAAGAAGAGTATAAGGAGTTTGATGCCAAATTTACCGAAGCAAAAAATTCAGTTTCAGAAGAGCGAGAAACAATGATTGAGGAAGTTTCAGATAATATTGAAAGGAATATGGTTCTACTTGGTGCCACTGCCATAGAAGACAAGCTCCAGCATGGGGTTCCAAATTGCATTGACAAGCTTTCCCAAGCAGGAATTAAGATTTGGGTTTTGACAGGGGATAAAATGGAAACTGCCATTAATATTGGTTTACTTAGAGAAGGAATGAAGCAAATTATAGTTCATTTGGATACTCCAGAAATTCGATCACTAGAGAAGGTTGGGGATAAGACAACTATTTCCAGGGCTTCAAGGGAGAGTATCCATCGTCAACTATCACAAGGTGCTGAACAACTTACAGCTGCTAGAGGAACCTCTGAGCAAGCATTTGCTCTAATTATTGATGGAAAATCACTTGCTTATGCTTTAGAGGATGATATGAAGAACTTTTTTCTGGATTTAGCAACTAGTTGTGCATCTGTTATTTGTTGTCGCGTGTCTCCAAAACAAAAAGCATTGGTCACTAGACTTGTAAAATCCAGAACCGGTAAAACTACGTTAGGTATTGGGGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCAGACATAGGGATTGGAATAAGTGGTGTTGAAGGAATGCAGGCTGTTATGTCTAGTGATGTTGCAATTGCACAATTTTGTTATTTGGAACCACTACTTCTTGTGCATGGACATTGGTGTTACCGAAGAATTTCATCAATGATATGTTACTTCTTTTACAAGAATATCACATTTGGATTCACTTTATTCTTATTTGAGGTTCATGCATCATTTTCTGGAGAACCTGCATATAATGATTGGTTTTTGTCTCTGTATAATGTATTTTTTTCGTCACTTCCCGTCATTGCCCTTGGGGTATTTGACCAAGATGTATCAGCTCGATATTGTCTGAGGTTTCCTATGTTATATCGAGAAGGTGTAGAAAACATCCTCTTTAGCTGGCGTCGAATAATTAGTTGGATGGTTAATGGATTTATTAGTTCCATAATAATTTTCTTCTTCTGCACAAAAGCTATGGAGATTCAGGCCTTTGATAAAGGAGGAAGAACTGCAGGAAGAGATATACTAGGAGCAACAATGTACACTTGCGTGGTTTGGGTAGTAAACTTGCAAATGGCACTTGCTATAAGTTACTTCACCTTGATTCAACATGTTTTAATATGGGGATCCATTGTTATCTGGTATATCTTCCTCTTGGCATATGGAGCAATGGCCTCATCATTTTCAGGAAATGCTTATCAAGTCTTTGCTGAAACTCTTGCTCCAACTCCTTCCTATTGGTTGTTGGTTTTTTTTGTAGTAATCACAACACTTGTACCATACTTCACTTTCTCTGCACTACAGATGCGATTCTTTCCCATGTATCATGAAATAGTACAATGGTTGAGGCACAAAGGAAAGACAAACGATCCTGAGTTTTGCGCTATGGTGCGACAAAGTTCATTGAGGCCGACAACTGTTGGATCAACAGCACGCAGAGCTGCCAAGACTAATAGTCTCAGCCTTAGAGGCAGCACCACTGACCATAGATGA 3585 0.381 MGRGRRLKKLHLSKIYTFTCGKKSLFNDEHSRIGSVGFSRVVLVNEFSENFNNTCENNNNNNYADNVVRSTKYTVANFLPKSLFEQFRRVANFFFLVTGVLSFTKLAPYTAVSAILPLIVVITATMVKEGIEDMRRKKQDIEVNNRIIEVHKGDGTFERTEWKNLKVGNIVRVEKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLEVTSSLHEYDFSDFKASIKCEDPNANLYSFVGSMEFKEQVHALSPQQLLLRDSKLRNTEYIFGAVIFTGHDTKVIQNSVSPPSKRSKIERKMDKVIYVLFFILFLMSFVGSVFFGITTKEDLKNNVMKRWYLRPDDSTIFFDPKRAPAAAFFHCLTALMLYSFFIPISLYVSIEVVKVLQSIFINQDINMYHEETDKPAHAVTSNLNEELGQVHTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEKAMNRRNGLEFDDIMNSPDRKAPIKGFNFTDERIMDGNWVNEPHANVIRNFFRLLAICHTAIPEVDEDTGKVSYEAESPDEAAFVIAAKEVGFEFYKRTQTSLSIFELDPVSQQKVKRTYCLLNVLEFNSTRKRMSVIVKDERGRILLLCKGADSVMFERLANNGREFEENILEHVHEYADAGLRTLLLAFRELDEEEYKEFDAKFTEAKNSVSEERETMIEEVSDNIERNMVLLGATAIEDKLQHGVPNCIDKLSQAGIKIWVLTGDKMETAINIGLLREGMKQIIVHLDTPEIRSLEKVGDKTTISRASRESIHRQLSQGAEQLTAARGTSEQAFALIIDGKSLAYALEDDMKNFFLDLATSCASVICCRVSPKQKALVTRLVKSRTGKTTLGIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDVAIAQFCYLEPLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLFEVHASFSGEPAYNDWFLSLYNVFFSSLPVIALGVFDQDVSARYCLRFPMLYREGVENILFSWRRIISWMVNGFISSIIIFFFCTKAMEIQAFDKGGRTAGRDILGATMYTCVVWVVNLQMALAISYFTLIQHVLIWGSIVIWYIFLLAYGAMASSFSGNAYQVFAETLAPTPSYWLLVFFVVITTLVPYFTFSALQMRFFPMYHEIVQWLRHKGKTNDPEFCAMVRQSSLRPTTVGSTARRAAKTNSLSLRGSTTDHR 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151601g00004 1194 Pfam Phospholipid-translocating P-type ATPase C-terminal 887 1137 IPR032630 -
Stsc151601g00004 1194 Pfam Cation transport ATPase (P-type) 531 623 - -
Stsc151601g00004 1194 NCBIfam phospholipid-translocating P-type ATPase 63 1144 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc151601g00004 1194 SUPERFAMILY Calcium ATPase, transduction domain A 153 289 IPR008250 -
Stsc151601g00004 1194 NCBIfam HAD-IC family P-type ATPase 830 938 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc151601g00004 1194 SFLD C1.7: P-type atpase like 414 910 - -
Stsc151601g00004 1194 Gene3D - 121 292 - -
Stsc151601g00004 1194 Gene3D - 699 897 IPR023214 -
Stsc151601g00004 1194 MobiDBLite consensus disorder prediction 1168 1194 - -
Stsc151601g00004 1194 PRINTS P-type cation-transporting ATPase superfamily signature 859 878 - -
Stsc151601g00004 1194 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Stsc151601g00004 1194 Pfam Phospholipid-translocating ATPase N-terminal 52 114 IPR032631 -
Stsc151601g00004 1194 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 702 IPR023299 GO:0000166
Stsc151601g00004 1194 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Stsc151601g00004 1194 SUPERFAMILY Calcium ATPase, transmembrane domain M 62 1137 IPR023298 -
Stsc151601g00004 1194 SUPERFAMILY HAD-like 419 901 IPR036412 -
Stsc151601g00004 1194 SFLD p-type atpase 414 910 IPR044492 -
Stsc151601g00004 1194 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 57 1148 - -
Stsc151601g00004 1194 FunFam Phospholipid-transporting ATPase 124 293 - -
Stsc151601g00004 1194 CDD P-type_ATPase_APLT_Dnf-like 68 1008 - -
Stsc151601g00004 1194 FunFam Phospholipid-transporting ATPase 540 698 - -
Stsc151601g00004 1194 Gene3D - 544 698 IPR023299 GO:0000166
Stsc151601g00004 1194 FunFam Phospholipid-transporting ATPase 698 899 - -
Stsc151601g00004 1194 MobiDBLite consensus disorder prediction 1168 1188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151601g00004 Stsc-Chr151601 21597 28070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151601g00004 10 1186 Primary Pumps ATPases AT1G68710 69.893 0.0 1784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151601g00004 K01530 - gmx:100785037 1917.12