Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151598g00002 ATGGAACACCAAGTATCAAGAACAAGTGAAGCTCAACCCATAAGATGCAAAGCTGCTGTTAGTCGCAAACAAGGTGAGCCATTGAGCATTGAAGAGATCATTGTGGCTCCACCAATGCCTCATGAAGCAAGGATTAAAGTTATTTGCACTACCCTTTGTCATGTTGATCTCACTTTTTGGAGGATTAAGGACCCTGCTTCAATTTGGCCAAGAATTTTGGGTCATGAGGCAATTGGGGTTGTGGAAAGCATAGGAGAGAATGTAACTGAAGTTACAAAAGGAGATGTAGTTATGACAATTTTCTTACCAGATTGTGGAGAGTGTGTGGATTGCAAATCAGAAAAGAGCAACCTTTGTTCTAAATTCCCATTCAAAGTATCTCCATGGGTGACTAGATATGAAAGTAGCAGATTCACTGATCTCAATGGACAAATCATACACCATTTTCTTTTTGTTTCAAGTTTCACTGAGTACACTGTTGTTGACATTGCCAATCTAACCAAGATTGATCCGGTCGCGCCTCCGAACAAGGCATGCCTCCTCAGTTGTGGTATCTCTGCCGGGCTAGGTGCTGCTTGGAGATTAGCAAATGTAGAGGCAGGTTCAATTGTGGCTATTTTTGGGTTAGGAAGCATTGGATTAGCAGTTGCTGAAGGAGCTAGATTTTGTGGAGCAACTAGGATTATAGGTGTGGATGTTAAGCTAGAGAAATTTGAAACTGCAAAAAAGTTTGGAGTTACTGATTTTGTTCATGCTGGAGAATGTGGAGACAAATCTCTGAGCCAGATAATTATAGATATGACAGGTGGTGGAGCAGATTATTGCTTTGAATGTGTTGGTTTGACATCATCAGTTCAAGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTCTTAGGAGTGGACAAACCAGAATCCAATTTGAGCCTTAACACTAGAGAGGTTCTCTTCAATGGGAAGAGCCTAATTGGATGCTTGTTTGGAGGACTCAAACCCAAATCTCATGTCCCTATTCTCCTAAAACGTTACATGGACAAGGAACTAAAGTTGGATGAATTTGTCACAAATGAGTTGAAATTTGAAGACATCAATAAAGCTTTTGATTTGCTGATAAATGGAGAGTGTGTTAAATGTGTGGTTTGGATGGACAAATGA 1164 0.4029 MEHQVSRTSEAQPIRCKAAVSRKQGEPLSIEEIIVAPPMPHEARIKVICTTLCHVDLTFWRIKDPASIWPRILGHEAIGVVESIGENVTEVTKGDVVMTIFLPDCGECVDCKSEKSNLCSKFPFKVSPWVTRYESSRFTDLNGQIIHHFLFVSSFTEYTVVDIANLTKIDPVAPPNKACLLSCGISAGLGAAWRLANVEAGSIVAIFGLGSIGLAVAEGARFCGATRIIGVDVKLEKFETAKKFGVTDFVHAGECGDKSLSQIIIDMTGGGADYCFECVGLTSSVQEAYASCRKGWGKTIVLGVDKPESNLSLNTREVLFNGKSLIGCLFGGLKPKSHVPILLKRYMDKELKLDEFVTNELKFEDINKAFDLLINGECVKCVVWMDK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151598g00002 387 FunFam S-(hydroxymethyl)glutathione dehydrogenase 188 328 - -
Stsc151598g00002 387 SUPERFAMILY GroES-like 336 384 IPR011032 -
Stsc151598g00002 387 PANTHER ALCOHOL DEHYDROGENASE 12 382 - -
Stsc151598g00002 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Stsc151598g00002 387 FunFam Alcohol dehydrogenase 6 19 200 - -
Stsc151598g00002 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 348 IPR036291 -
Stsc151598g00002 387 Gene3D - 188 328 - -
Stsc151598g00002 387 Gene3D - 19 380 - -
Stsc151598g00002 387 Pfam Zinc-binding dehydrogenase 212 332 IPR013149 -
Stsc151598g00002 387 Pfam Alcohol dehydrogenase GroES-like domain 40 168 IPR013154 -
Stsc151598g00002 387 SUPERFAMILY GroES-like 10 198 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151598g00002 Stsc-Chr151598 11072 13451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151598g00002 42 186 Monolignol Biosynthesis Gene Families AT4G37970 30.201 1.05e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151598g00002 K00121 - gmx:100806887 633.254