Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151598g00001 ATGGAAGACAAAGCAGCAAGAACAAGTGAAGGTCAACCCATAAGATGTAAAGCTGCTGTTGGAAGAAAACCAGGGGAGCCATTAATCATTGAAGAGATTATTGTGGCACCTCCAATGGCTCGTGAAGCAAGGATTAAAGTTATATGCACTTCTCTTTGTTACAGCGATATCACTTTTTGGAAGATGAAGGATCCCCCTGCAATTTGGCCAAGAATTTTCGGTCATGAGGCAATTGGGATTGTAGAAAGTGTAGGAGAGGATGTGAGTGAAGTTACAAAAGGAGACATGGTTGTTCCAATTTTCTTACCAGATTGTGGGGAGTGTGTGGATTGCAAGTCAGAAAAGAGCAACCTTTGTTCTAAATTTCCATTCCAAGTATCTCCATGGATGACCAGATATGAAAGTAGCAGATTCACTGATCTCAATGGACAAATCATACACCATTTTCTTTTTGTTTCAAGTTTTAGTGAGTACACTGTGGTTGACATTGCCAATCTAACCAAGATTGATCCGGTTGCGCCTCCGAACAAGGCCTGCCTCCTCAGCTGCGGCGTATCCACCGGGGTAGGTGCTGCTTGGAAAGCAGCAAATGTGGAGCCAGGATCAAGTGTAGCCATTTTTGGACTAGGAAGCATTGGATTGGCAGTTGCTGAAGGAGCTAGACTTTGTGGAGCAACTAAGATTATAGGTGTAGATGTCAACCCAGAAAAATTTGAAATTGGAAAAAAGTTTGGAGTCACTGACTTTGTTCAGGCCGGAGCAGACAAATCTGTGAGCCAGGTTATTAAAGAGATGACTGGTGGAGGTGCAGATTATTGCTTTGAATGTGTTGGAATGGCATCATTGGTCCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAGTTGTTTTAGGAGTGGATAAGCCAGGAAGTAATTTGAGCCTCAAGTCTAGTGAGGTTCTTTGTGATGGGAAGAGTCTCATAGGAGCCTTGTTTGGAGGACTCAAACCCAAGTCTCATGTTCCTATTCTCCTCAAACGCTACATTGACAAGGAACTGAAATTGGATGAGTTTATAACACATGAAGTGGAGTTTAAGGACATCAATAAAGCATTCGATTTGCTGCTTAAAGGAGGGTGTCTGCGATGTGTGATTTGGATGAACAAATAA 1158 0.4249 MEDKAARTSEGQPIRCKAAVGRKPGEPLIIEEIIVAPPMAREARIKVICTSLCYSDITFWKMKDPPAIWPRIFGHEAIGIVESVGEDVSEVTKGDMVVPIFLPDCGECVDCKSEKSNLCSKFPFQVSPWMTRYESSRFTDLNGQIIHHFLFVSSFSEYTVVDIANLTKIDPVAPPNKACLLSCGVSTGVGAAWKAANVEPGSSVAIFGLGSIGLAVAEGARLCGATKIIGVDVNPEKFEIGKKFGVTDFVQAGADKSVSQVIKEMTGGGADYCFECVGMASLVHEAYASCRKGWGKTVVLGVDKPGSNLSLKSSEVLCDGKSLIGALFGGLKPKSHVPILLKRYIDKELKLDEFITHEVEFKDINKAFDLLLKGGCLRCVIWMNK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151598g00001 385 Pfam Zinc-binding dehydrogenase 212 330 IPR013149 -
Stsc151598g00001 385 SUPERFAMILY GroES-like 334 382 IPR011032 -
Stsc151598g00001 385 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Stsc151598g00001 385 Gene3D - 188 326 - -
Stsc151598g00001 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 346 IPR036291 -
Stsc151598g00001 385 FunFam S-(hydroxymethyl)glutathione dehydrogenase 188 326 - -
Stsc151598g00001 385 PANTHER ALCOHOL DEHYDROGENASE 11 381 - -
Stsc151598g00001 385 Gene3D - 19 378 - -
Stsc151598g00001 385 FunFam Alcohol dehydrogenase 6 19 200 - -
Stsc151598g00001 385 SUPERFAMILY GroES-like 9 196 IPR011032 -
Stsc151598g00001 385 Pfam Alcohol dehydrogenase GroES-like domain 41 168 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151598g00001 Stsc-Chr151598 6893 10524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151598g00001 41 183 Monolignol Biosynthesis Gene Families AT4G37970 29.452 5.12e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151598g00001 K00121 - gmx:100806887 661.373