Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151589g00001 ATGGAGCCTAAATGCATGGAAGTCTGCAGATGGTTTACATACATTTGGCATAACGTGCACTTGGAACAAATGGGGTCAAGCAGCTTTCTGTGGAATTTTACCAAAAAGTTTGTCACATTTGGGCTCATTACCGTCACTGTATCTGATCGATACGTAACAGTGGTTCGAGTTCGGGGTGGCTCTATGTCTCCCACATTAAATCCCAAAACCAGCTCTTCTGGAAACTTCTCTGATGATTATGTCTTGGTTGAGAAGTTTTGCATTGACAAATACAAATTTTCACATGGAGATGTTGTGGTCTTCAGTTCCCCATTGAATCACAAGGAGCGACACATAAAGAGAATAGTTGCATTACCCGGTGAATGGTTTGGCAGTCGTCAAAACTACGATGTTTTGAAGGTTCCAGAAGGACATTGTTGGGTTGAGGGAGATAATGCGGCTTCTAGCATGGATTCAAAGTCATTTGGACCTATTCCTTTAGGGCTCATTCGAGGAAGAGTGACCCATGTTGTGTGGCCTCCACACAGAATAGGTGCTATCCAGAGTCCTCCACGAGAAGAATTATCTTCTTTATAG 576 0.4306 MEPKCMEVCRWFTYIWHNVHLEQMGSSSFLWNFTKKFVTFGLITVTVSDRYVTVVRVRGGSMSPTLNPKTSSSGNFSDDYVLVEKFCIDKYKFSHGDVVVFSSPLNHKERHIKRIVALPGEWFGSRQNYDVLKVPEGHCWVEGDNAASSMDSKSFGPIPLGLIRGRVTHVVWPPHRIGAIQSPPREELSSL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151589g00001 191 CDD S26_SPase_I 54 167 IPR019533 GO:0004252|GO:0006465
Stsc151589g00001 191 PRINTS Bacterial leader peptidase 1 (S26A) family signature 111 123 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc151589g00001 191 PRINTS Bacterial leader peptidase 1 (S26A) family signature 50 66 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc151589g00001 191 PRINTS Bacterial leader peptidase 1 (S26A) family signature 134 153 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc151589g00001 191 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 24 182 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Stsc151589g00001 191 NCBIfam signal peptidase I 42 127 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc151589g00001 191 SUPERFAMILY LexA/Signal peptidase 52 180 IPR036286 -
Stsc151589g00001 191 Gene3D Umud Fragment, subunit A 49 182 - -
Stsc151589g00001 191 FunFam Mitochondrial inner membrane protease subunit 48 184 - -
Stsc151589g00001 191 Pfam Signal peptidase, peptidase S26 31 121 IPR019533 GO:0004252|GO:0006465
Stsc151589g00001 191 Pfam Signal peptidase, peptidase S26 127 172 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151589g00001 Stsc-Chr151589 1404 3142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151589g00001 62 184 MADS-box Gene Family AT1G29960 37.984 1.43e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151589g00001 K09648 - qsa:O6P43_016615 270.781