Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151584g00003 ATGAGAGTCTCAACATTGAAACTACAAGATCAATACTGGGGTGGTACTCTTGCACCATTCTTGGGAAATCTAACATTCCTCAAGGAGATCAATCTTACTAACATCAACTTGCAGGGTGAGATTCCAAGAGAAGTTGGCCATTTAAAGAGGTTGCAGATTCTTGATTTGAGCCAAAATAATCTTCATGGTCAGATTCCTACTAAGATGATGAACTGTTCAAGACTCAAGGTAATTATATTGTTGTACAATAATCTTACTGGTAGAGTTCCTTCATGGTTTGGTTCTATGATACAACTTACTGATATGTTGCTTGGAGTCAACCATTTTGTTGGTAGTATCCCAGCTTCTTTGGGAAATCTTTCATCTCTTGAAGAGTTGTCATTTGGATACAATCACTTGGAAGGAAGCGTAACTCCAGCTTTGGGTAGGTTGTCAAATTTGATATTTTTGTCTTTGGCAGTAAACTATTTTTCTGGCAATATCCCTCCTTCATTTTACAACCTTTCAAATATTCAATTTCTTACAATCACCGAAAACCAGTTAGAGGGTACTCTTCTCACCAATATACCAATCGCATTTCGCAATCTTCAAATACTTGAGTGTGGACTGAACCGATTCACTGGTACTTTGCCATCTTCAATATCCAACCTTTCTGAACTACAAGAATTTGATGCAACGGGAAATGGTTTTCATGGACCAATTTCTCCTGCTATAGGAAGTTTACACAAACTCCAGTCATTTAATGTCGCTCATAACAGATTTGGAAGTGGAAAGACTGACGATTTGGATTTCCTTTCCTCATTACAGAATTGTACTCAATTGCAAATACTTGGCATTGATAACAATTATTTAGGAGGTGTATTAACAGATCTCATAGGCAACTTATCAAACAACCTCGTTTGGCTTACTATGGGGAACAATCAAATATCTGGAAGGATACCTGATGGAATTGGAAAACTAATCAACCTAACAGCAATTGGTATGGAGGGAAATTCTCTTGAGGGAACAATTCCATATTCAATTGGAAAGCTCAAGAATCTGGTATCGTTGACCATGGGGGCAAATAAGTTGTTTGGCAATATTCCTCTTGTCATTGGTAACCTTACTATGTTGTCTTTTGTTGATCTGGGATCAAATAAATTTGAAGGATTCATTCCTTTTACACTTGGAAATTGCACCAAGATGGAGAGATTTTATGCTCCTGGAAACAATTTAAGTGGTGATATACCAAATCAATTATTTGGCTACCCACAAGGTTTAATAGAGTTGTCTCTGTACTCAAACTCCTTTACTGGTCCCATTCCTTTTGATCTTGGCAAATTGAACCATCTTTCCATCTTGCATTTACAAGATAACAAGTTGATTGGTGAGATTCCCATGGAACTTAGTGGTTGTTCTGCTCTAACAGAGCTCAAACTAGAAAGAAACTGGTTCCATGGAAGTATACCTTCATTCTTAGGGTCTCTATTGTCCCTTGAAATCTTAGACCTTTCTAATAACAACTTCTCAAGCACAATTCCGCATAAACTTTTGAATCTCACATTGCTCAATACTTTGAACTTATCCTTCAACCATCTTTCTGGTGAAGTCCCGGTAGGAAGGATATTTAATAATGTCACAGCAATATCACTCACCGGAAATATAAATCTATGCGGTGGGATTCCTCAATTGAATCTTCCTCCATGCCCTACTTTGCCTTTACAGAAGAAACACAAGAGATCTATTAAGAAGAGAGTCATCATCAGCATTGCATTTGGAGGGGTTCTAATCACTTTTGTAACTTTTATCAGTATATATCTTCTCAAGAAAAAGGCAAAAAAGTTGTCCATAAAATCCCTAGCTTTGCAATATGGCTATGTGAAGGTTTCCTATGGAGAACTACATCATGCAACGAATGGATTTTCTTCATCCAATTTAGTTGGCACAAGAAACTTTGGTACTGTGTATAAAGGAACCCTTGTCCATTTTGAGAGACCTATTGCTATAAAAGTGTTGAATCTTCAAACACATGGGGCGTTGAAGGGTTTCCTAGCTGAATGCAAAGCTCTAGGAAAAATCAAACACAGAAACCATCTCAACATACTGACTTGTTGTTCCAGTGTTGATTACAAAGGCAAAGATTTCAAGGCTATAGTATTTGAGTTCATGCCTAATGGGAGTCTAGAATCCTTGTTGCACAACACTATTGAAGATAGTGAGTCCGCAAATCTAAGTCTCAACTTTGTACAGAGGGTAAATATTGCACTTGATGTGGCTTTTGCATTGGATTATCTTCATAATGATTCAGGGGAAGCTATAGTTCACTGCGATGTTAAGCCAAGTAATGTTCTGCTTGATGATGAAGTTGTTGCTCACTTGGGAGACTTTGGATTAGCTAGACTCATTCATGGTGCTGCAAGCCGTTCTAGCAGTGGTCAAGCAAGCTCCTCTACAATTAAGGGAACCATTGGATATATTCCACCAGAGTATGGAGGAGGTGGATCAGTGTCAACAGAAGGAGACATGTATAGCTATGGAATTCTTCTTTTGGAGATGCTTACTGCCAAGAAGCCAACTGATAGCATATTTGGCGAAGGTCTAAACCTTCGCAATTTCTATAACATTGCAAAGGCAGAAGGTATCATTGAGATTGTTGATTCAAGATTGCTCATTCCAACTGATGAACGAGATCAGGGAAGAAGGGTCATCACAAGGCTGCAAAATATGGAAGACATTGTTCGAGAGTGTCTTGTGTCGTTTGCTAGGATTGGAATTGCATGTTCTGAAGAATCTCCCTCTCAACGAATGGGCATAAAAAATGTCATCATGGAGTTACATGCAATTAAACAGAAGCTGCTTTCATAA 2844 0.3822 MRVSTLKLQDQYWGGTLAPFLGNLTFLKEINLTNINLQGEIPREVGHLKRLQILDLSQNNLHGQIPTKMMNCSRLKVIILLYNNLTGRVPSWFGSMIQLTDMLLGVNHFVGSIPASLGNLSSLEELSFGYNHLEGSVTPALGRLSNLIFLSLAVNYFSGNIPPSFYNLSNIQFLTITENQLEGTLLTNIPIAFRNLQILECGLNRFTGTLPSSISNLSELQEFDATGNGFHGPISPAIGSLHKLQSFNVAHNRFGSGKTDDLDFLSSLQNCTQLQILGIDNNYLGGVLTDLIGNLSNNLVWLTMGNNQISGRIPDGIGKLINLTAIGMEGNSLEGTIPYSIGKLKNLVSLTMGANKLFGNIPLVIGNLTMLSFVDLGSNKFEGFIPFTLGNCTKMERFYAPGNNLSGDIPNQLFGYPQGLIELSLYSNSFTGPIPFDLGKLNHLSILHLQDNKLIGEIPMELSGCSALTELKLERNWFHGSIPSFLGSLLSLEILDLSNNNFSSTIPHKLLNLTLLNTLNLSFNHLSGEVPVGRIFNNVTAISLTGNINLCGGIPQLNLPPCPTLPLQKKHKRSIKKRVIISIAFGGVLITFVTFISIYLLKKKAKKLSIKSLALQYGYVKVSYGELHHATNGFSSSNLVGTRNFGTVYKGTLVHFERPIAIKVLNLQTHGALKGFLAECKALGKIKHRNHLNILTCCSSVDYKGKDFKAIVFEFMPNGSLESLLHNTIEDSESANLSLNFVQRVNIALDVAFALDYLHNDSGEAIVHCDVKPSNVLLDDEVVAHLGDFGLARLIHGAASRSSSGQASSSTIKGTIGYIPPEYGGGGSVSTEGDMYSYGILLLEMLTAKKPTDSIFGEGLNLRNFYNIAKAEGIIEIVDSRLLIPTDERDQGRRVITRLQNMEDIVRECLVSFARIGIACSEESPSQRMGIKNVIMELHAIKQKLLS 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151584g00003 947 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 716 947 - -
Stsc151584g00003 947 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 263 - -
Stsc151584g00003 947 ProSiteProfiles Leucine-rich repeat profile. 491 512 IPR001611 GO:0005515
Stsc151584g00003 947 SMART LRR_typ_2 489 513 IPR003591 -
Stsc151584g00003 947 SMART LRR_typ_2 48 72 IPR003591 -
Stsc151584g00003 947 SMART LRR_typ_2 441 465 IPR003591 -
Stsc151584g00003 947 SMART LRR_typ_2 120 144 IPR003591 -
Stsc151584g00003 947 SMART serkin_6 634 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151584g00003 947 Gene3D Ribonuclease Inhibitor 2 134 IPR032675 -
Stsc151584g00003 947 Gene3D Ribonuclease Inhibitor 135 193 IPR032675 -
Stsc151584g00003 947 Gene3D Ribonuclease Inhibitor 194 259 IPR032675 -
Stsc151584g00003 947 SUPERFAMILY Protein kinase-like (PK-like) 616 941 IPR011009 -
Stsc151584g00003 947 FunFam LRR receptor-like serine/threonine-protein kinase EFR 264 568 - -
Stsc151584g00003 947 Gene3D Transferase(Phosphotransferase) domain 1 716 946 - -
Stsc151584g00003 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Stsc151584g00003 947 PANTHER RECEPTOR-LIKE PROTEIN 55 5 125 - -
Stsc151584g00003 947 Gene3D Phosphorylase Kinase; domain 1 596 715 - -
Stsc151584g00003 947 ProSiteProfiles Protein kinase domain profile. 634 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151584g00003 947 Gene3D Ribonuclease Inhibitor 260 570 IPR032675 -
Stsc151584g00003 947 SUPERFAMILY L domain-like 297 552 - -
Stsc151584g00003 947 SUPERFAMILY RNI-like 12 254 - -
Stsc151584g00003 947 FunFam LRR receptor-like serine/threonine-protein kinase EFR 604 715 - -
Stsc151584g00003 947 Pfam Protein kinase domain 637 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151584g00003 Stsc-Chr151584 7550 10853 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151584g00003 2 946 Receptor kinase-like Gene Family AT3G47570 43.277 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc151584g00003 Pkinase 1.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151584g00003 - - ahf:112766919 1330.47