Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151578g00002 ATGAGTGTGGTGGGGTTTGACATTGGAAATGAGAACTGTGTCATTGCTGTAGTGAAGCAAGGTGGGGTTGATGTTTTGTTGAATGAGGAATCCAAACGTGAAACCCCTGCTGTCGTCTGCTTCGGCGAGAAGCAACGTTTCCTGGGATCGTCTGGTGCTGCTTCTGCTATGATGCACCCAAAGTCCACAGTGTCTCAAGTGAAGAGATTGATAGGGAGGAAATTTTCGGACCCTGATGTTCAAAAGGATCTCAAGATGCTCCCTGTTGAAACTTCTGAAGGCTCAGATGGTGGCATTCTCATTCACTTGAAATACTTGAAGGAGAATCATAGATTTACACCGGTTCAGATTTTAGCAATGCTCTTTTCTCACTTGAAGACTATAGCCGAAAAAGATTTGGGGATACTTGTTTCGGATTGTGTTATAGGGGTTCCGTCTTACTTCACTGACTTGCAGCGACGGGCGTATCTAAATGCAGCAGCAATTGTTGGGTTGAAGCCTTTGAGATTGATTCATGATTGTACTGCAACCGGTATTGGTTATGGAATTTACAAAGCGGATTTTCCTAGTGCAGCCCCAATTTATGTTGCATTTGTCGACATTGGTCATTGTGATACTCAGGTCTCTATTGCAGCATTTCAGGCTGGGAAAATCAAGATACTTTCGCATGCTTTTGACTGGAGCTTAGGTGGGCGAGACTTCGACGAGGTTCTGTTTAGTTATTTTGCAGGGAAATTTAGGGAACAATACAGCATTGATGTGTATTCTAATGCCAGGGCGTGTATCAGGCTGCGCTCAGCATGCGAGAAATTGAAGAAGGTTTTGAGTGCAAATGCAGAGGCACCTCTGAACATTGAGTGCTTGATGGACGAAAAGGATGTCAAGGGCCTTATCAAGAGGGAAGACTTCGAGAAATTGGCATCAGGATTATTAGAGAGAATTCGTGTTCCTTGCAACAAAGCATTAGCTGATGCAGGCTTGACTGTAGAAAAGATTCATTCTGTTGAGCTAGTCGGCTCTGGTTCAAGGATTCCAGCTATAACCAGATTATTAACTTCTCTGTTCAAAAGAGAACCAAGACGAACGCTGAATGCGAGCGAGTGTGTAGCTCGTGGTTGTGCTCTTCAGTGTGCAATGCTCAGTCCTGCTTTACGTGTCAAGGAATACAAGGTCCAGGATTGTAGTCCTTTTTCCATTGGACTTTCTTCAGAGGAAGGTCCAATTTCTGCAGAACCAAAGGGTGTGATTTTCCCAAGAGGCCAACCTATTCCAACTGTTAAAACCCTTACATTTCGTTTCAGTAACTTGCTACGTTTGGAAGCATTTTATGCTAATCCAAGTGAACTACCACCTGGGATGTCTCCTAAAATTAGCCGCTTCACGATTGGTTTCCATGGATACCATCCTATTAGAATGGCAGAAGTTAAAGTTGGAGTTCAACTCAACTTGCATGGAATTGTCTGTATCAAATCAGCTAGAGTAATTACAACAGGTAATCATCATTCAGATTCCAAAGCAATGGATGCTGAACACATTTCTGGGGAAGACGATAATGCCTTTTTACAGGCTGGTTGTATGGGGAAAGATAACGGTAACAAAAAGCTTCACGTACTAGTGAGTGAGGATACGTATGGGGGAATGACCAAGGCTGAGATATCAGAAGCCGAAGAAAAAGAAATCCGATTGGCCCACCAGGACACTACAATGGAGCTAACCAAAGACAAGAGGAATGCCTTGGAATCATACATCTATGAAACAAGGACTAAGCTTTTCAACACATATCGGAGCTTTGCAACCGAGGAGGAGAGGGAAAGGATATCTAGGAGCCTGCGAGAGAGTGAAGAGTGGCTTTACGGTGATGGTGACGATGAAACCGTACATGCTTATTCTGCTATACTGGAAGATCTAAGACAGTTGAGAATCGGTACAAAGATGAAGCAGCCAGAGTGGAAGCTACGAGAGATTTGTTAA 1971 0.4363 MSVVGFDIGNENCVIAVVKQGGVDVLLNEESKRETPAVVCFGEKQRFLGSSGAASAMMHPKSTVSQVKRLIGRKFSDPDVQKDLKMLPVETSEGSDGGILIHLKYLKENHRFTPVQILAMLFSHLKTIAEKDLGILVSDCVIGVPSYFTDLQRRAYLNAAAIVGLKPLRLIHDCTATGIGYGIYKADFPSAAPIYVAFVDIGHCDTQVSIAAFQAGKIKILSHAFDWSLGGRDFDEVLFSYFAGKFREQYSIDVYSNARACIRLRSACEKLKKVLSANAEAPLNIECLMDEKDVKGLIKREDFEKLASGLLERIRVPCNKALADAGLTVEKIHSVELVGSGSRIPAITRLLTSLFKREPRRTLNASECVARGCALQCAMLSPALRVKEYKVQDCSPFSIGLSSEEGPISAEPKGVIFPRGQPIPTVKTLTFRFSNLLRLEAFYANPSELPPGMSPKISRFTIGFHGYHPIRMAEVKVGVQLNLHGIVCIKSARVITTGNHHSDSKAMDAEHISGEDDNAFLQAGCMGKDNGNKKLHVLVSEDTYGGMTKAEISEAEEKEIRLAHQDTTMELTKDKRNALESYIYETRTKLFNTYRSFATEEERERISRSLRESEEWLYGDGDDETVHAYSAILEDLRQLRIGTKMKQPEWKLREIC 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151578g00002 656 FunFam Heat shock 70 kDa protein 4 105 194 - -
Stsc151578g00002 656 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 385 580 IPR029047 -
Stsc151578g00002 656 FunFam Heat shock 70 kDa protein 4 1 77 - -
Stsc151578g00002 656 Gene3D - 186 360 - -
Stsc151578g00002 656 FunFam Heat shock 70 kDa protein 4 547 655 - -
Stsc151578g00002 656 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 516 IPR029047 -
Stsc151578g00002 656 SUPERFAMILY Actin-like ATPase domain 193 381 IPR043129 -
Stsc151578g00002 656 FunFam Heat shock 70 kDa protein 4 38 113 - -
Stsc151578g00002 656 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 549 629 IPR029048 -
Stsc151578g00002 656 PRINTS 70kDa heat shock protein signature 472 488 - -
Stsc151578g00002 656 PRINTS 70kDa heat shock protein signature 30 42 - -
Stsc151578g00002 656 PRINTS 70kDa heat shock protein signature 363 383 - -
Stsc151578g00002 656 PRINTS 70kDa heat shock protein signature 140 160 - -
Stsc151578g00002 656 PRINTS 70kDa heat shock protein signature 332 348 - -
Stsc151578g00002 656 PRINTS 70kDa heat shock protein signature 2 15 - -
Stsc151578g00002 656 PRINTS 70kDa heat shock protein signature 388 407 - -
Stsc151578g00002 656 SUPERFAMILY Actin-like ATPase domain 1 184 IPR043129 -
Stsc151578g00002 656 Gene3D Actin; Chain A, domain 4 230 313 - -
Stsc151578g00002 656 Gene3D - 547 653 IPR029048 -
Stsc151578g00002 656 Gene3D - 5 374 - -
Stsc151578g00002 656 Pfam Hsp70 protein 3 639 IPR013126 GO:0005524|GO:0140662
Stsc151578g00002 656 FunFam Heat shock 70 kDa protein 4 230 313 - -
Stsc151578g00002 656 CDD HSPA4_like_NDB 2 381 - -
Stsc151578g00002 656 Gene3D - 38 113 - -
Stsc151578g00002 656 PANTHER HSC70CB, ISOFORM G-RELATED 1 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151578g00002 Stsc-Chr151578 10494 13768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151578g00002 4 620 Calmodulin-binding Proteins AT1G16030 30.274 1.01e-85 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151578g00002 K09489 - gmx:100795914 916.761