Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151573g00002 ATGGAACCTGAGGGTGGCAATAAACATACTCCTCACAAAACTCCGTACACTCAACTTGAACAGGTTAGCTCTGATTTCATTCTAGCAATTGGCCAGCAGGAGCAAGACGGAACAATATTCGCAGCGCTCGGAACAATACTCGAAAGCCAAGGCTCCTCGTCGTCAATTGATAACGAGCAGGACGAGGATGACAACGCAGATTTCTTCACAAGCTATGAGTTTGAACCGTCGGACCTTCAGTTTCTTGAGAGCGAAGGAAGCAACTACGGCGACGACGAAGACATGGAGGACTTTGACTTGGACGTGGATGAATTGACATACGAAGAGTTGATTGAGTTGGAAGACTTTATAGGGAAGGAGAAGAGAGGATTATCATCAAACGAGGTTTCTTCGTGCTTGCATTCTTACACCTTTGATTCTGTCGATGAGAGGAAAAATAATGGAACCGATCGGTGTGTGATTTGCCAGATTGAGTATGAAGAAGGTGAAGGATTGGCGGCACTTCATTGTGGGCATCCTTTTCACACAGATTGCATAAGCAAGTGGCTTCAAGTTAGAAAGGTTTGCCCAATATGTAGCAGTGAAATTTCCGCTGCTCCCGAGATTATGAATAAACAAGAACCCTTCATTGTTTAG 636 0.4465 MEPEGGNKHTPHKTPYTQLEQVSSDFILAIGQQEQDGTIFAALGTILESQGSSSSIDNEQDEDDNADFFTSYEFEPSDLQFLESEGSNYGDDEDMEDFDLDVDELTYEELIELEDFIGKEKRGLSSNEVSSCLHSYTFDSVDERKNNGTDRCVICQIEYEEGEGLAALHCGHPFHTDCISKWLQVRKVCPICSSEISAAPEIMNKQEPFIV 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151573g00002 211 FunFam E3 ubiquitin ligase BIG BROTHER-related 116 199 - -
Stsc151573g00002 211 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 55 196 IPR033276 GO:0004842|GO:0016567|GO:0046621
Stsc151573g00002 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 199 IPR013083 -
Stsc151573g00002 211 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Stsc151573g00002 211 SMART ring_2 152 192 IPR001841 -
Stsc151573g00002 211 Pfam Ring finger domain 151 192 IPR001841 -
Stsc151573g00002 211 SUPERFAMILY RING/U-box 151 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151573g00002 Stsc-Chr151573 17763 18398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151573g00002 99 202 C3H Transcription Factor Family AT3G63530 47.619 9.82e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151573g00002 K19045 - gmx:100777284 216.468