Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151568g00004 ATGAAATGTGCAAGTGTTTTTGCATTGTTCCTTTCTGGGAAAAGAAACACCGAAGAATCTAAGGTTGTTGAAGGTAGTTATGAATATGATCACAGAAAGAGTGCACACAAAGTCAAAGGACCATCATCATCTTCATCTGATTTATCATCTGATAGCAACAAGAGTTCATCAAAATTGAAGTCATCAGATTCTTATGGATCATCTAGCACTTCAAATACTAAGCTTGGAAGTGCAGGGAACTTCAGCTATGAAGAAATCTACAAGGCAACAGCAAAATTCTCTGCAGCTAATAAGGTTGGGGAAGGTGCCTTTGGAACTGTTTATAAGGGAAAGCTTAAAGATGGAACTCTTGTGGCTGTAAAGCGTGCCAACAAGGATGTAGAAAACAAGAACTTAGGTGAGTTCAAGAATGAAGTATCCACCTTGTCAAAGATTGAGCATCTCAATCTTGTGAGGCTGTATGGATACTTGGAGCATGCAGATGAAAAGATTATTGTTGTTGAGTATGTTAATAATGGCTCACTCCGGGAACATCTAGATGGTAAAAGGGGTGATGGGCTAGAAATTGGTGAGCGTTTAGACATAGCAATTGATATAGCTCATGCAGTTACTTACCTTCATATGTACACAGATCATCCAATTATTCATAGAGACATCAAAGCATCAAACATCTTACTTACTGACAAACTGAGGGCTAAAGTGGCCGACTTTGGTTTCGCTCGGCTGGCTGCGGAAGACCCTTCTGCAACCCATGTTTCAACAAAAGTTAAAGGAACAGCAGGGTACATTGATCCTGATTACATGAGATCTCACAAGCTTTCTGAGAAGAGTGATGTTTATTCGTTCGGCGTGTTGCTTGTTGAAATGGTAACCGGACGACATGCTGTTGAGCCGAGGAAACCCCTCAGTGAGAGAGTTACAATTAAATGGGTAAGTAACTAA 942 0.4034 MKCASVFALFLSGKRNTEESKVVEGSYEYDHRKSAHKVKGPSSSSSDLSSDSNKSSSKLKSSDSYGSSSTSNTKLGSAGNFSYEEIYKATAKFSAANKVGEGAFGTVYKGKLKDGTLVAVKRANKDVENKNLGEFKNEVSTLSKIEHLNLVRLYGYLEHADEKIIVVEYVNNGSLREHLDGKRGDGLEIGERLDIAIDIAHAVTYLHMYTDHPIIHRDIKASNILLTDKLRAKVADFGFARLAAEDPSATHVSTKVKGTAGYIDPDYMRSHKLSEKSDVYSFGVLLVEMVTGRHAVEPRKPLSERVTIKWVSN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151568g00004 313 ProSitePatterns Protein kinases ATP-binding region signature. 99 121 IPR017441 GO:0005524
Stsc151568g00004 313 MobiDBLite consensus disorder prediction 18 74 - -
Stsc151568g00004 313 SMART serkin_6 93 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151568g00004 313 Gene3D Phosphorylase Kinase; domain 1 64 169 - -
Stsc151568g00004 313 MobiDBLite consensus disorder prediction 39 74 - -
Stsc151568g00004 313 MobiDBLite consensus disorder prediction 18 37 - -
Stsc151568g00004 313 Gene3D Transferase(Phosphotransferase) domain 1 170 313 - -
Stsc151568g00004 313 SUPERFAMILY Protein kinase-like (PK-like) 67 303 IPR011009 -
Stsc151568g00004 313 ProSiteProfiles Protein kinase domain profile. 93 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151568g00004 313 Pfam Protein tyrosine and serine/threonine kinase 96 294 IPR001245 GO:0004672|GO:0006468
Stsc151568g00004 313 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 58 296 - -
Stsc151568g00004 313 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 68 169 - -
Stsc151568g00004 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151568g00004 Stsc-Chr151568 16434 19215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151568g00004 64 308 Receptor kinase-like Gene Family AT1G79620 46.122 3.76e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Stsc151568g00004 PK_Tyr_Ser-Thr 8.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151568g00004 - - gmx:100819818 427.172