Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151568g00001 ATGTCTTACTCAAGGAGATCAAGGTATTCTCCCTCTCCTTCTCCTTCCCCATACAAGCCGTACAGCAGGTCCATATCCAGGTCTCTTTCAAGGTCAAGATCGAGAAGCCGTTCAAGGAGTGTCTCACGTGATGCAGAAAATCCTGGAAACAACTTGTATGTGACAGGGTTGTCTCCTAGGATCACCAAAAGAGAACTGGAGAAGCATTTTGCAGCTGAAGGAAAAGTCATAGATGTGCATCTTGTAGTTGATCCATGGACAAGAGAATCACGTGGGTTTGGTTTTGTGACAATGGCAAGTCTTGAGGATGCCGATCGGTGTGTGAAATATTTAAACCGCTCTGTACTTGAAGGGCGTGTAATAACAGTGGAGAAGGCCAGAAGGCGACGCGGACGAACACCAACGCCTGGAAGATATCTTGGGCTAAGGACTATTCGAGCACGCCGTCGCTCACGCTCTCCAAGCTACTCTTCTCGGCGCTCTCCTAGCTATTCCCCCTACCGAAGGAGCTATAGTCGTTCGCCATACTCTCCAGACCGTAGTAGGAGTCCCTCTTATTCACCTGACTATCGCCGTAGGAGATCTTACTCTCCTGACTACCGTCGAAGGAGGTCTTATTCTCCATACTACTACATTCGACGCAGGTCACCATCTCCATATTACAGTCGACGCAGATCTCGATATGATCATTATGAGCGGCGGAGGTTATATTCGCGATCTCCATCCCCTTACAGCAGGTCACCTGTCAGTTACCGTGACAGATCATACTCTCCCTATGACTCAAGATATGACTCACCTGATGCTCGCCACTACAAAAGGCACCGTTACAGGTCAGTTTCGCCAAGTGTGTCCCCTCTACCAAGGCGAAGGTCAAGGAGGAGCTATTCAAGGAGTGTCAGTCCTGTTCGAAGGAGGAGCTACTCTCGAAGCAACTCTCCCCGACACAGCAGGAGGAGCTACTCCCGAAGTGTGTCTCCACCAAGGAAGAGTTCTGGGAGGAGCCATTCAAGAAGCTCCAAAAGGAGTGGTGGTTATTCCAAACGTAGTAGAAGCCCAAGTCCAAGTGTGAGTGCAAGTTCAAGATCATTTTCAAGGTCCAACACTCCCAGATCTGCTTCTCCTTCAACTTAG 1131 0.4934 MSYSRRSRYSPSPSPSPYKPYSRSISRSLSRSRSRSRSRSVSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMASLEDADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTIRARRRSRSPSYSSRRSPSYSPYRRSYSRSPYSPDRSRSPSYSPDYRRRRSYSPDYRRRRSYSPYYYIRRRSPSPYYSRRRSRYDHYERRRLYSRSPSPYSRSPVSYRDRSYSPYDSRYDSPDARHYKRHRYRSVSPSVSPLPRRRSRRSYSRSVSPVRRRSYSRSNSPRHSRRSYSRSVSPPRKSSGRSHSRSSKRSGGYSKRSRSPSPSVSASSRSFSRSNTPRSASPST 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151568g00001 376 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 38 328 - -
Stsc151568g00001 376 MobiDBLite consensus disorder prediction 317 332 - -
Stsc151568g00001 376 SUPERFAMILY RNA-binding domain, RBD 41 155 IPR035979 GO:0003676
Stsc151568g00001 376 Gene3D - 4 134 IPR012677 -
Stsc151568g00001 376 MobiDBLite consensus disorder prediction 156 184 - -
Stsc151568g00001 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Stsc151568g00001 376 SMART rrm1_1 51 124 IPR000504 GO:0003723
Stsc151568g00001 376 MobiDBLite consensus disorder prediction 257 271 - -
Stsc151568g00001 376 MobiDBLite consensus disorder prediction 1 53 - -
Stsc151568g00001 376 MobiDBLite consensus disorder prediction 232 376 - -
Stsc151568g00001 376 MobiDBLite consensus disorder prediction 240 254 - -
Stsc151568g00001 376 MobiDBLite consensus disorder prediction 147 202 - -
Stsc151568g00001 376 MobiDBLite consensus disorder prediction 345 376 - -
Stsc151568g00001 376 FunFam Serine/arginine-rich splicing factor SR45a 2 134 - -
Stsc151568g00001 376 CDD RRM_SF 52 124 - -
Stsc151568g00001 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151568g00001 Stsc-Chr151568 2274 5716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151568g00001 51 157 Eukaryotic Initiation Factors Gene Family AT2G36660 30.841 6.91e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151568g00001 - - gmx:100808038 212.616