Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151565g00003 ATGGAAGAAATACAGTCTCAATCAGATGCATATCGGTCTTCTTCTTCGTCGGCGAGTAGCCCGGCGAGTAGGGTGCCATCAAGTCACTTCTTCTACCTTAGAAAACCGGGTTCTCTTCGACAACCAATCTCATTCGAGGACTCACCTGAATGGGAAGACACTGATGTTGAAGCTTCTAGAGGTGATGAAGGAGGAGGAGGAGACACTATCAATGTTGCAACCTCGGCTTCACCTTCACTTTCTAAGCTCAATAGTGGTTCCTTGGCATCTCCATATGGTTCATATATCTTGGAGGGTGCAGCTCTTCCTAATAAGATTGCGGGCGCTTCGGTTGTGTGGAGAGATTTGACTGTTACTATGAAGGGAAAAAGGAAGTACTCTGATAATGTTATAAAGAGTTCAACTGGTTTTGCCTTACCTGGTACAATGACAGTGATTATGGGACCTGCTAAATCAGGGAAGTCTACCTTGTTACGCGCCATTGCAGGAAGATTGCATCCTTCAACCAGGACTTATGGTGAAGTGTTTGTGAATGGGGCGAAATCACACTTGTCCTATGGATCATATGGATTTGTGGAGAGAAGGACCAATCTGATTGGATCACTTACCGTGAGTGAGTTTTTGTACTATTCGGCTCTGCTTCAACTACCAGGATTCTTGTTTCAGAAAAAGAATGTGGTAGAGGAAGCTATCCAAGCAATGTCTTTAGGTGATTATGCAAATACACTTATTGGTGGACATTGTTATACAAAGGGCCTCTCCGGTGGCGAGAGAAGACGTGTTAGCATTGCAAGAGAGCTCGTGATGAGACCACAAATCCTATTTATAGATGAACCACTTTATTGTCTGGACAGTGTCTCAGCACTTCTAATGATGGTTACACTAAAGAAACTTGCAAGCAGTGGTTGCACTCTTATCTTTACAATTTACCAGAGCAGCACAGAAGTATTTGGCCTTTTTGATCGAATATGCCTTCTTTCGAATGGAAATACTTTGTTCTTTGGAGAAACATTAGCTTGCTTGCAGCACTTCTCAAATGCTGGATTTCCATGTCCTATCATGCAAAGTCCTTCGGATCACTTTCTTCGTGCAATCAATACAGATTTTGACAGGATAATTGCAATGTGTAAAAACTGGCAGGATGACAATGGAGAGTTTTCTTCAGTCAACATGGACACAGCTGTGGCTATTCGCACACTCGAAGCAACATATAAATCATCTGCAGATGCAGCTGCTGTTGAAAATATGGTTATGAAACTCACAGAAAAGGAAGGTCCATCACTGAAATACAAAGGCAAAGCTAGTGCTGCTACTCGCATAGCGGTCTTGACATGGAGGTCTTTATTGGTTATGTCAAGGGAGTGGAAGTATCACTGGATTCGTCTTGTTCTCTGTATGCTTCTTACACTTTGCATTGGTACTATATTTTCTGGCTTGGGGCACTCGCTGTCTTCGGTCGGGACTAGAGTTACAGCAATTTTTGTTTTTGTGTCATTCTTTTCGCTTCTAAGCATTGCTGGCGTGCCGGGACTTATTAAAGAAATCAAGATATATGCATGTGAAGAATCTAACCAGCATTCGAGTGCACTAGTGTTTTTACTTGGACAACTCTTGTCCAGCATACCATTCCTTTTCCTCATTTCGATTTCATCGAGTCTCGTTTTCTACTTCCTAGTAGGGCTGAGAGACGAATTCAGCTTCTTAATGTACTTTGTGCTCAACATTTTCATGTCTCTTTTAGTAAGTGAAGCACTTATGCTACTTGTTGCTACTTTATGGCAAGATATCTTCTGGAGTTTCTTAACACTTTTATGCATTCAGGTAGTGATGATGCTTTCTGCTGGCTATCTTCGAATCCGAAATGATTTGCCTGGACCGGTGTGGATATATCCAATGTCATACATATCCTTTCATACCTACTCTATTCAGGGGCTATTGGAGAATGAGTACCTAGGGAGCACCTTTTCAATTGGGGAGGTGAGGACCATATCAGGATTTCAAGCTCTCCAAAACATCTATGACATCTCTTCTGACACCAATTCAAAGTGGTCAAATTTACTGGTTTTGTTTCTCATGGCAGTTGTTTATCGTTTTCTTGTGTTCATTTTATTGTGCAGAAAATCATCTCTGCCTTTGATTAGTTGTAGGTGTAAAAGAGTAGATACAGATTTTGCTAGTTGA 2181 0.4163 MEEIQSQSDAYRSSSSSASSPASRVPSSHFFYLRKPGSLRQPISFEDSPEWEDTDVEASRGDEGGGGDTINVATSASPSLSKLNSGSLASPYGSYILEGAALPNKIAGASVVWRDLTVTMKGKRKYSDNVIKSSTGFALPGTMTVIMGPAKSGKSTLLRAIAGRLHPSTRTYGEVFVNGAKSHLSYGSYGFVERRTNLIGSLTVSEFLYYSALLQLPGFLFQKKNVVEEAIQAMSLGDYANTLIGGHCYTKGLSGGERRRVSIARELVMRPQILFIDEPLYCLDSVSALLMMVTLKKLASSGCTLIFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQDDNGEFSSVNMDTAVAIRTLEATYKSSADAAAVENMVMKLTEKEGPSLKYKGKASAATRIAVLTWRSLLVMSREWKYHWIRLVLCMLLTLCIGTIFSGLGHSLSSVGTRVTAIFVFVSFFSLLSIAGVPGLIKEIKIYACEESNQHSSALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSFLMYFVLNIFMSLLVSEALMLLVATLWQDIFWSFLTLLCIQVVMMLSAGYLRIRNDLPGPVWIYPMSYISFHTYSIQGLLENEYLGSTFSIGEVRTISGFQALQNIYDISSDTNSKWSNLLVLFLMAVVYRFLVFILLCRKSSLPLISCRCKRVDTDFAS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151565g00003 726 Pfam ABC-2 type transporter 440 650 IPR013525 GO:0016020|GO:0140359
Stsc151565g00003 726 FunFam ABC transporter G family member 3 104 348 - -
Stsc151565g00003 726 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 107 708 - -
Stsc151565g00003 726 Gene3D - 105 348 IPR027417 -
Stsc151565g00003 726 Pfam ABC transporter 140 280 IPR003439 GO:0005524
Stsc151565g00003 726 SMART AAA_5 140 330 IPR003593 GO:0016887
Stsc151565g00003 726 CDD ABCG_EPDR 108 335 - -
Stsc151565g00003 726 MobiDBLite consensus disorder prediction 70 84 - -
Stsc151565g00003 726 MobiDBLite consensus disorder prediction 1 26 - -
Stsc151565g00003 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 347 IPR027417 -
Stsc151565g00003 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 111 353 IPR003439 GO:0005524
Stsc151565g00003 726 MobiDBLite consensus disorder prediction 40 84 - -
Stsc151565g00003 726 ProSitePatterns ABC transporters family signature. 253 267 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151565g00003 Stsc-Chr151565 19798 23979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151565g00003 138 314 Calmodulin-binding Proteins AT2G36910 25.668 6.88e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151565g00003 - - jcu:105628040 1113.21