Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151564g00002 ATGACCTCGCCCTTTGGTTTTTACTGGGAAGTGTCCTCTGCTCCAATATTGCAAGAACAGGAGCAAGAATTACAACGTTATGTAACCCTAATGAAAGATGAAATTGAAGATTACTTCATTCTCAAGGTCAGAGTTAAGCATCAACTACAACTTCCTTCACAGTCAAGATTCATTGATTCGTTTTCATCTGAAAGCTCAATTCTAATTCAAGTGCCAGAATTCCTTCAAAACGGTTCATCACATATGCAAATACATTTCCCTAATGATATTATACCAGACGTGTTGTTGATGCATGACATTATGCCAAGGGTCATAGCCTACGCGGAAGCCATAGTTGAAACTCGTCGTTGGGGATTCCTCTACGAAAGACCCGATTTTCGTTTGTTCAGTTTGAATTTGAATATTATTATCTTAAGATCGTTTTGGAACGTTGATGAGGTTATCACCGACATGATGATTGAGGAGTCCATGGGAGATACTGATAATGTTAAGATGGTTCCTGCATCGGAGAGTGCCATTGAGTCTCTTGAGAGAGTGAAGCTTGAAAATCAAAACAATGTAGCTGATGAGAGGTGCAGTATTTGTCTAACGGAATTTGAATATGGTGAAGATGCAGAACAAGTTTCATCAATGCCTTGTAAGCATGTGTATCATCAAGAATGTCTTGTTCGCTGGCTGAAGACTAGTCATTTATGTCCTTTATGTCGTTATCAAATGCCTATTTAG 726 0.3884 MTSPFGFYWEVSSAPILQEQEQELQRYVTLMKDEIEDYFILKVRVKHQLQLPSQSRFIDSFSSESSILIQVPEFLQNGSSHMQIHFPNDIIPDVLLMHDIMPRVIAYAEAIVETRRWGFLYERPDFRLFSLNLNIIILRSFWNVDEVITDMMIEESMGDTDNVKMVPASESAIESLERVKLENQNNVADERCSICLTEFEYGEDAEQVSSMPCKHVYHQECLVRWLKTSHLCPLCRYQMPI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151564g00002 241 SUPERFAMILY RING/U-box 172 239 - -
Stsc151564g00002 241 Coils Coil 17 37 - -
Stsc151564g00002 241 SMART ringv_2 191 236 IPR011016 GO:0008270
Stsc151564g00002 241 ProSiteProfiles Zinc finger RING-type profile. 192 236 IPR001841 -
Stsc151564g00002 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 240 - -
Stsc151564g00002 241 Pfam Ring finger domain 191 236 IPR001841 -
Stsc151564g00002 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 241 IPR013083 -
Stsc151564g00002 241 SMART ring_2 192 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151564g00002 Stsc-Chr151564 13528 14253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151564g00002 153 240 C3H Transcription Factor Family AT1G18760 37.500 2.26e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151564g00002 - - adu:110276959 319.316