Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151558g00002 ATGTCATCAGAGGCAGTGCAGTTGCGCATCAGTGACAATCATGTGGTTATGGACAATGGGATACTACAAGTGTATTTGTCGAAACCGGGTGGATATGTCACCAGAATACAATATAACGGCATTGATAATCTGCTTGAAGCTGGAAATGAGCGAGGCAACAGAGGGATTGTAGGGACGAGTTTTGATGTTATAGTGGAAAATGAAGAACAAATTGAGATCTCGTTCAAAAGAATGTGGGATCCGTCTATGGAAGGAAAGCTTTCCCCCCTCAATATTGACAAAAGGTATGTGATGCTACGTAATTCGTCAGGATTCTATTGCTACGCAATATTTGAACACCAAAAGGAGTGGCCTGCTTTCAACATACCTCAAATCAGGATTGTTTTCAAGCTTCGAGAAGACAAGTTTCATTATATGGCAGTGGCAGATAATAGACAAAGATTCATGCCACTTCCAGAGGATCGATTACCTGGAAGGGGAAAAGTACTCACTCCCCCAGAAGCAGTTTTGCTTGTTGATCCTGTGGAGCCAGAGTTCAAAGGAGAGGTAGATGACAAGTACCAATACTCAAGCGAAAACAAAGATCTAAAGGTTCATGGATGGATAAGTTCTAAATCAGAAAGTGATCCAGGCACAGGATTTTGGGTAATAATACCAAGCAATGAGTTTCGTTCCGGTGGCCTTGTTAAACAGAATCTTACCTCCCATGTGGGTCCTATTAGCCTCGCCATGACTGAGGAAGTTGAAAATTGGCCCTATGATTTTCCAGCTTCAAATGATTTTCAAAAGTCCAGCGAAAGGGGCAGCGTAAGTGGCAGGTTACTAGTTAGAGACAGGATATTAAGTGAGGATTGCATCGGAGCAAATGGTGCATACGTAGGACTAGCACCACCTGGAGAAGCTGGATCATGGCAAAGAGAAAGCAAGGGATACCAATTTTGGAGCATAGCAGATGATGGTGGGTACTTCTCAATTGATAATATACGTAGTGGAGATTACAATATCTTTGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAGCAATGATGTCCTCACGATAACTCCAGATTGTGACAAAAAACTTAGTGACATTATTTTTGAGCCTCCAAGAGATGGTCCAACTTTATGGGAAATAGGAATTCCTGATCGTTCTGCTGCTGAGTTCTATGTTCCTGATCCCAATCCTAATTATGTAAACAAGCTCTATATTGATCATCCAGATAAGTTTAGGCAATACGGCCTGTGGGAAAGATATTCAGAATTATATCCAAAGGAAGATTTAATTTATACTGTTGGTGAAAGTGATTATAGCAAAGATTGGTTCTTTGCACATGTCACCAGGAAGAAAGATGATGGCACTTACCAAGCCACTACATGGCAAATTAAGTTCGATCTTGATCATGTGGAGCCAAGTGGAACCTATAAGCTAAGATTGGCTCTTGCAAGTGCAAATCTCTCTATATTACAGGTTAGAGTGAATGATGAAAAGCAAGATCCTCCACTGTTTACAACAGGAGTGATTGGAAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTACTGGCTATTCACCATTGATGTGCTTGCTCATCAACTATTCGAAGGAAACAATACAATTTATCTAACTCAGGCCATGGCTACAAGCCCCTTGCCCCTCTTTCAGGGAATAATGTATGACTATATTCGTTTAGAATGTCCTAATTCTTTTTTTTTAAAAGAAATCAAAGTTTAG 1740 0.4075 MSSEAVQLRISDNHVVMDNGILQVYLSKPGGYVTRIQYNGIDNLLEAGNERGNRGIVGTSFDVIVENEEQIEISFKRMWDPSMEGKLSPLNIDKRYVMLRNSSGFYCYAIFEHQKEWPAFNIPQIRIVFKLREDKFHYMAVADNRQRFMPLPEDRLPGRGKVLTPPEAVLLVDPVEPEFKGEVDDKYQYSSENKDLKVHGWISSKSESDPGTGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMTEEVENWPYDFPASNDFQKSSERGSVSGRLLVRDRILSEDCIGANGAYVGLAPPGEAGSWQRESKGYQFWSIADDGGYFSIDNIRSGDYNIFAWVPGFIGEYWSNDVLTITPDCDKKLSDIIFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYVNKLYIDHPDKFRQYGLWERYSELYPKEDLIYTVGESDYSKDWFFAHVTRKKDDGTYQATTWQIKFDLDHVEPSGTYKLRLALASANLSILQVRVNDEKQDPPLFTTGVIGKDNAIARHGIHGLYWLFTIDVLAHQLFEGNNTIYLTQAMATSPLPLFQGIMYDYIRLECPNSFFLKEIKV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151558g00002 579 CDD RGL4_C 377 567 - -
Stsc151558g00002 579 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 244 570 - -
Stsc151558g00002 579 SUPERFAMILY Starch-binding domain-like 267 352 IPR013784 GO:0030246
Stsc151558g00002 579 Gene3D - 373 567 - -
Stsc151558g00002 579 Pfam Rhamnogalacturonate lyase family 5 183 IPR010325 -
Stsc151558g00002 579 CDD RGL4_N 8 244 - -
Stsc151558g00002 579 SUPERFAMILY Galactose-binding domain-like 372 567 IPR008979 -
Stsc151558g00002 579 FunFam Rhamnogalacturonate lyase B 263 362 - -
Stsc151558g00002 579 CDD RGL4_M 266 365 IPR029413 -
Stsc151558g00002 579 Gene3D - 267 360 - -
Stsc151558g00002 579 Pfam Polysaccharide lyase family 4, domain III 375 566 IPR029411 -
Stsc151558g00002 579 Pfam Polysaccharide lyase family 4, domain II 289 361 IPR029413 -
Stsc151558g00002 579 Gene3D - 5 266 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151558g00002 Stsc-Chr151558 5818 32671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151558g00002 1 570 Polysaccharide Lyase AT1G09890 57.031 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151558g00002 K18195 - gmx:100815677 923.309