Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151548g00001 ATGTCTAGCAATACTAATTGCACTGTTTACATCGGCAATCTGGATGAGAGAGTCACAGATAGGGTCTTGTATGATATTTTAATACAGGCAGGACGAGTGGTAGAATTACATATTCCTAAAGATAAGGAATCAGAAAAACCGAAAGGCTTTGCCTTTGCGGAATATGAAACCGAGGAGATTGCAGATTATGCTGTCAAGCTTTTCTCAGGCCTTGTGACGCTCTACAACAGAACACTGAAGTTTGCGATCTCTGGGAAAGACAAAACCCCTAACGGTTCTGCCGGAATCACACCAACATCAAATTCTTCTCAAAGACCAAGGCCTTACCCGGTGCCATTTAATAACTCGGAATCGGATAGGATATCAGCACATGACCGTTTTTCGGATTATGCAGCTCCTCGTCGCCGTGTAACCGACCTACCTGGTGGGCTTGGATCTTACCATAGTGGCAACGATTTTGAGTTCAGCCGAAGAGCTTTTGGGGCAACATTGGATAGCATTAGTGGCTCTAGGTCTCGCCGCTGGGATAAAAGTTAA 537 0.4488 MSSNTNCTVYIGNLDERVTDRVLYDILIQAGRVVELHIPKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYNRTLKFAISGKDKTPNGSAGITPTSNSSQRPRPYPVPFNNSESDRISAHDRFSDYAAPRRRVTDLPGGLGSYHSGNDFEFSRRAFGATLDSISGSRSRRWDKS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151548g00001 178 MobiDBLite consensus disorder prediction 132 152 - -
Stsc151548g00001 178 SMART rrm1_1 8 82 IPR000504 GO:0003723
Stsc151548g00001 178 MobiDBLite consensus disorder prediction 86 119 - -
Stsc151548g00001 178 MobiDBLite consensus disorder prediction 90 118 - -
Stsc151548g00001 178 Gene3D - 1 93 IPR012677 -
Stsc151548g00001 178 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Stsc151548g00001 178 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 178 - -
Stsc151548g00001 178 SUPERFAMILY RNA-binding domain, RBD 4 85 IPR035979 GO:0003676
Stsc151548g00001 178 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151548g00001 8 89 Eukaryotic Initiation Factors Gene Family AT1G49760 28.049 1.89e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151548g00001 K12831 - gmx:100803118 274.633