Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151547g00002 ATGAGTGATAACATAGCCTCTTCACAACAAGCCTTTAACATTAAGTACAATAGTATCACATTTTCTTCAACAAGTGGAACCTCTTCTTCTTCTCATCAACATCATAATCAAGATTATGGGGTTATCAAAGAGCAAGATCGGTTGCTTCCAATTGCAAATGTTGGGAGAATCATGAAGCAAATCCTTCCAACAAATGCAAAGATCTCAAAGGAAGCAAAGGAGACTATGCAAGAGTGTGTTTCTGAGTTCATAAGCTTTGTGACTGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTTAATGGTGATGATATTTGTTGGGCCTTGGCTACTCTAGGGTTTGATGATTATGCTGAGCCACTCAAAAGGTACTTGCATAAGTTTAGGGAATTGGAATGTGAAAAAGCTAATAATCAACATAATAATAATAATAGGGTTATTAGTACTACCACCAATAATAATAATCTTATTGAAAAATATAATAGTTATGGAGGCGAAGACGATGAAGACTAA 522 0.364 MSDNIASSQQAFNIKYNSITFSSTSGTSSSSHQHHNQDYGVIKEQDRLLPIANVGRIMKQILPTNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKFRELECEKANNQHNNNNRVISTTTNNNNLIEKYNSYGGEDDED 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151547g00002 173 FunFam Nuclear transcription factor Y subunit B-3 37 162 - -
Stsc151547g00002 173 SUPERFAMILY Histone-fold 45 155 IPR009072 GO:0046982
Stsc151547g00002 173 ProSitePatterns NF-YB/HAP3 subunit signature. 79 95 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc151547g00002 173 PRINTS CCAAT-binding transcription factor subunit A signature 114 132 - -
Stsc151547g00002 173 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Stsc151547g00002 173 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Stsc151547g00002 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 48 112 IPR003958 -
Stsc151547g00002 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 26 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc151547g00002 173 Gene3D Histone, subunit A 36 165 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151547g00002 Stsc-Chr151547 26230 26945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151547g00002 26 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.875 5.19e-64 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc151547g00002 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151547g00002 K08065 - zju:107426318 211.075