Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151545g00001 ATGGCCATTAACCAACAACCTTCATCCCAACCATTTAGTTCTGGCACACTTCCATCCCAACCTCTTCCAAATCCAAAGGGAGGCATTAATGTGATTCAAACTGACGGAATAGAGGAAGAACTAGAAGAGGAAGAAGAAGATGATTGGTTGTATGATTTGTTAGTTAAACTGGTAGGTGAAAATAGCTCGGATGATAAGGAAGACTATGAGGAGAATGAGGTAGAGGATAAGGAAGAGGAAGAACTATTCTTTGTAGCAACTGTCTATGGAGATACCAAAGCTGAAAAGGAAGAACTACCAGAGAAGTGTGAAAATCCTGATCCTTGTTCGATAACTTGCAAGATAGGTGAAGTTGAAATCCCAGAGTGCATGTGTGATCAGAGCTTAACGGCTCTCCAAACCTCTCAAAACTTCAAACCTGTGACATCGCTGCCTCTCCGGAAACGGAAAACGGCGACGCCGTCGCCGCAACGAGTCAGAGACCTCAACGCGAAGCGCAGGGGACCACCGTATCGGCGACGAGCTAGATGCCGTAACTATTCAGAGCCCGCTGTTGGCCAGAACGAGGAACATCAAGGTACATTGAATGCCATAAGTACCATGACAAATAGGTGTGATGGCCGGAAAGTCTCTAAAGGTCGCCGCTCATCATCATCATCAGTTGAGGATGCTAGTGGTGAAAGTAACACGGGTGGAGAATGTCATTTAAAGAAAGGCCCTTGGACATCAACAGAGGATGCAATTTTAGTAGATTATGTTAAGAAGCATGGAGAAGGGAACTGGAATGCTGTTCAAAGAAATTCAGGACTTCTCAGATGTGGGAAAAGTTGCCGTTTAAGATGGGCAAATCACTTGAGACCAGATTTAAGAAAAGGTGCGTTCACTGAAGAAGAAGAGCGTCAGATCATTGAACTCCATGCTAAGATGGGAAACAAATGGGCACGGATGGCTGCAGAGCTGCCTGGGCGTACAGACAATGAGATAAAGAACTATTGGAACACGAGGATTAAAAGAATGCAGCGAGCTGGTCTACCAATCTACCCTCCTGACATATGCATGCGGGTGATGCATGGCAATCAAGAAAGTTTAAATGTTGGCACCTTGACGGATGGTGGCAATCAGCATGATGATTTCTCACGGACAGATACTATGGCAGAGATACCGCAGTTAGATTTCAAATACTACAAGTCCTGTCCAAGTCTATCTTATGGATCATCAATGTTTGATGTACCTGAAAGTAGCATGTTTGAAAAGAGTTCGGACTCATCCCATGCTTACAATATCATGTTTCCGATGATGAATCCTTCAAAGCGCCTTCGGGAATCAGACGTGCAATATAGCAATTTGGACAGTTGTATCAGTAGTACTGTCCCAATATTTGAACAGTGTGGTGATTACATGTGTGATGAAACTTCTGACCACACTCGGTTGTCCTCTCCATGTGATCCTATTCTAAACACCACCGATCAGTTTCATGGTGATGATGCATATGGCAGCCATGCCACTTTAAATGGCAATAACTCTTCTTCTTCTGTGCCCATATCAGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATTTAGAAACTCAACAAGGTATCTGGGGCACACCTGCTTCCCCACTTCCCTCACTTGAGTCCGTTGACACGTTGATCCAGTCTCCAGTAGCCAAGCCGGCTCCTTCGGATCCTGTTTCTCCAAAGAGCAGTGGTTTGCTGGATGCAATAATATACCAGCCGAAGCGCTCACAAGAGACGAATAACAATTTACTGCAAGAAACACCCAATGATTGTGTTCGAAAAGTAGTCAAGATTTCGACCATGAAGTGTAAGCCGGAATGGGATGAACAAGGGGGGCCGCGTTGTCCCTTAGATCAGTCTGCTGCTTCAGGTGTGACCGATTATACTCCCATTAGCATGTGCTTGGTGGATGCACTCCAATCAGTCGAAACCATTCAGGATCATAATATTAAGCACGAACTAGGCACACAGTACCCAGCTTACTTTTCTGGGAAGAAAGATAACATGAATCAAATAGACATCACAAGGCCTGATGCTTTACTTGACTTGGGTTGGTTTGGGAATATTGTCGATTATGATGGCGATCTGTCCCTTATAAATGATCCTTTCGGCACATTTCTTGGTCCAGATCCCCATGGTTGCTAA 2166 0.4483 MAINQQPSSQPFSSGTLPSQPLPNPKGGINVIQTDGIEEELEEEEEDDWLYDLLVKLVGENSSDDKEDYEENEVEDKEEEELFFVATVYGDTKAEKEELPEKCENPDPCSITCKIGEVEIPECMCDQSLTALQTSQNFKPVTSLPLRKRKTATPSPQRVRDLNAKRRGPPYRRRARCRNYSEPAVGQNEEHQGTLNAISTMTNRCDGRKVSKGRRSSSSSVEDASGESNTGGECHLKKGPWTSTEDAILVDYVKKHGEGNWNAVQRNSGLLRCGKSCRLRWANHLRPDLRKGAFTEEEERQIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPDICMRVMHGNQESLNVGTLTDGGNQHDDFSRTDTMAEIPQLDFKYYKSCPSLSYGSSMFDVPESSMFEKSSDSSHAYNIMFPMMNPSKRLRESDVQYSNLDSCISSTVPIFEQCGDYMCDETSDHTRLSSPCDPILNTTDQFHGDDAYGSHATLNGNNSSSSVPISGAMKLELPSLQYLETQQGIWGTPASPLPSLESVDTLIQSPVAKPAPSDPVSPKSSGLLDAIIYQPKRSQETNNNLLQETPNDCVRKVVKISTMKCKPEWDEQGGPRCPLDQSAASGVTDYTPISMCLVDALQSVETIQDHNIKHELGTQYPAYFSGKKDNMNQIDITRPDALLDLGWFGNIVDYDGDLSLINDPFGTFLGPDPHGC 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151545g00001 721 SUPERFAMILY Homeodomain-like 236 332 IPR009057 -
Stsc151545g00001 721 MobiDBLite consensus disorder prediction 1 27 - -
Stsc151545g00001 721 FunFam MYB-related transcription factor 237 290 - -
Stsc151545g00001 721 MobiDBLite consensus disorder prediction 185 206 - -
Stsc151545g00001 721 ProSiteProfiles Myb-like domain profile. 286 336 IPR001005 -
Stsc151545g00001 721 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 216 695 - -
Stsc151545g00001 721 MobiDBLite consensus disorder prediction 1 31 - -
Stsc151545g00001 721 FunFam Transcription factor GAMYB 293 339 - -
Stsc151545g00001 721 Pfam Myb-like DNA-binding domain 238 285 IPR001005 -
Stsc151545g00001 721 Pfam Myb-like DNA-binding domain 291 334 IPR001005 -
Stsc151545g00001 721 MobiDBLite consensus disorder prediction 141 239 - -
Stsc151545g00001 721 SMART sant 290 338 IPR001005 -
Stsc151545g00001 721 SMART sant 237 287 IPR001005 -
Stsc151545g00001 721 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 286 340 IPR017930 -
Stsc151545g00001 721 Gene3D - 237 290 - -
Stsc151545g00001 721 CDD SANT 240 285 IPR001005 -
Stsc151545g00001 721 ProSiteProfiles Myb-like domain profile. 233 285 IPR001005 -
Stsc151545g00001 721 CDD SANT 293 334 IPR001005 -
Stsc151545g00001 721 Gene3D - 293 358 - -
Stsc151545g00001 721 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 285 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151545g00001 Stsc-Chr151545 10266 17276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151545g00001 236 717 MYB Transcription Factor Family AT5G06100 37.402 3.05e-84 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151545g00001 Myb_DNA-binding 5.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151545g00001 K09422 - gmx:100800658 620.542