Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151543g00001 ATGGCTAACCCCAAATTACAATCCAAACCCCTACTACCGTCTCTCTCTCCTCTCTTCTCCTTCTTCTTTCTTGCACTCTTCCTCTTCTCCACCGCCACCGCCGACGATGCCGCCGTCATGTCCAACTTCCTCAAATCACTCACCGGAGCCCCTTCCGACTGGTCCACCACCACATCGCACTGCAAGTGGTCCGGCATCACCTGCGACAGCTCCAACAGCGTAACCTCCATCAAGCTCTCCAAGAACTCCGTCTCGGGAGCCCTCCCTTCGGATCTCAACACCCTCACGCAACTAACCACTCTCTCCCTCGCCTCAAACGCGCTCACCGGCGCGTTGCCCTCACTCGCCAACCTCACCATGCTCCAAAACGTGGTCCTAGACCAAAACAACTTCACCTCAGTCACCAAAGGTNNNNNNNNNNTCTCGGGACTCACGAGCCTCCAGGTGCTAACCATGACCACCAATGTTAACCTCCAGCCATGGACGATTCCCACCGAGTTGACTCAGTCTACCGAACTCGTCACCCTCGACCTCGGCACCACCAACCTTTTCGGTACCTTGCCGGACTTCTTCGACTCATTTCCTGGCCTTCAGAACCTCCGCCTCTCCTACAACAACCTCACCGGTCAGCTGCCCCGGTCACTCGCCGGATCTTCCGTACAGAATCTCTGGCTCAACAACCAGAACGACGGCGCAGGTTTTACCGGCACCGTCGATGTACTCGCTTCAATGACGCACTTGAATCAGGTCTGGCTTCAGAAAAATCAGTTCACCGGTCCCATTCCGGATTTGTCAAACTGCACCGGTTTGTTCGATTTGCAGCTTCGCGATAACCAGTTAACCGGCGTTGTACCGGTTGCCCTGATCACAATGTCGAGTTTGAAGAACATTTCTTTGGACAATAACAGACTCCAGGGTCCCACTCCGGCGTTCTTGAAAGGCGTGACGGTTACGCTTACCGGGCTCAACAGGTTTTGCGCCAAAGCTGGAGAGTCTTGTGATGATAGAGTTAACACCCTTCTTGCGGTTGCGGCCGGGTTTGGGTACCCGTACCGGTTGGCGGACTCGTGGAATGGGAATGATCCTTGCAATGACTGGACATCTGTTGTGTGTGCTAGTGGGAAGATAGTAACCTTGAATTTCAAGAATCTTGATTTGAATGGGACTATCTCGCCGGCTTTCGCCAACTTAACGGATTTGAGGAACTTGTATCTGAATGACAATAATTTGACTGGCTCAATACCGGAGAGTTTGACGAGTTTGGCTCAGCTTGAGGTTCTGGATGTTTCTGATAACAATTTGACAGGGAAGATTCCGAGTTTCCCTCCTAAGGTGAAGTTCAGCTACGGTGGCAATGCTTTGCTTGGGGTTTCTGGTGGAGGTGGAGGTAGTGGGAATGGCTCATCTTCAAGTTCTGGTGATGCACCAAGTGGAAGTCCTTCTAAAGGATCGAGTAGTACTTCGCTTTCGCCTGGTTTGATCGCAGGTATAGCCATCATTGCAGTGTTCTTTGTTGCGGTTGTTTTGTTTGTGTTTTGCAAGTGTTATGCCAAGAACAGGAGTAGGAAATTTGGAAGGGTTAGTAACCCTGAAACAGGGAAAGGTGAAGTTAAGATTGATATGGTTAGTGCTTCAAATGCCAACGGATTTGGTGGAGGAGGGGGAGCGGCGAGCGAGTTGCAAAGCCAGGGTAGCGAGCCGAGCGAACAGCTCCCTGTTTTTGAAGGTGGGAATGCCACAATTTCAATCCAAGTTCTTAGGCAAGTCACAAATAATTTCAGTGAGGATAACATTTTGGGCAGGGGAGGGTTTGGTGTTGTGTATAAAGGGGAATTGCACGATGGGACTAAGATTGCGGTGAAGAGAATGGAATCGGTTGCAATGGGAACAAAAGGAATGAATGAGTTCCAAGCAGAGATTGCAGTTCTTAGTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATATTGCATGAATGGCAATGAAAGACTTCTTGTGTATGAGTACATGCCTCAAGGAACACTGACACAGCATCTGTTCGATTGGAATGAGAATGGTTGCGCTCCTTTGACATGGAAACAAAGGGTGGCAATAGCTTTAGATGTAGCAAGGGGAGTGGAGTACTTGCACAGCTTGGCTCAGCAAAGCTTCATTCATAGGGACTTGAAACCCTCAAACATTCTCTTGGGTGATGACATGAGAGCTAAGGTTGCTGATTTTGGTTTGGTTAAAAATGCACCGGATGGAAAGTATTCAGTTGAGACGCGGTTAGCTGGGACTTTCGGATATCTTGCACCCGAATATGCAGCTACTGGAAGAGTGACGACAAAAGTCGATGTCTACGCATTTGGGGTAGTTTTGATGGAACTCATTACAGGCAGAAGGGCCTTGGATGATACCGTGCCGGATGATCGATCACACCTGGTTTCATGGTTCCGCAGGATACAAATTAACAAGGAGAACATCCCAAAGGCAATTGATCAGACTCTTGATCCCGACGAAGAAACCATGGAGAGCATTTATAAGGTGGCTGAGCTTGCAGGCCATTGCACAGCTCGCGAGCCGTACCAAAGGCCTGATATGGGGCATGCTGTGAATGTTTTGGTCCCTCTTGTTGAGCAATGGAAGCCTACAAACCATGAAGAAGAAGAAGGTTATGGCATTGATCTCCACATGAGCCTTCCTCAAGCTCTAAGAAGGTGGCAAGCCAATGAAGGTACTTCCACCATGTTCAATGACATGTCCTTTTCCTCGCAAACGCAGTCGAGCATTCCAGCGAAACCTTCCGGGTTTGCTGACTCTTTTCATTCAACGGATTGCCGGTGA 2829 0.4924 MANPKLQSKPLLPSLSPLFSFFFLALFLFSTATADDAAVMSNFLKSLTGAPSDWSTTTSHCKWSGITCDSSNSVTSIKLSKNSVSGALPSDLNTLTQLTTLSLASNALTGALPSLANLTMLQNVVLDQNNFTSVTKGXXXXSGLTSLQVLTMTTNVNLQPWTIPTELTQSTELVTLDLGTTNLFGTLPDFFDSFPGLQNLRLSYNNLTGQLPRSLAGSSVQNLWLNNQNDGAGFTGTVDVLASMTHLNQVWLQKNQFTGPIPDLSNCTGLFDLQLRDNQLTGVVPVALITMSSLKNISLDNNRLQGPTPAFLKGVTVTLTGLNRFCAKAGESCDDRVNTLLAVAAGFGYPYRLADSWNGNDPCNDWTSVVCASGKIVTLNFKNLDLNGTISPAFANLTDLRNLYLNDNNLTGSIPESLTSLAQLEVLDVSDNNLTGKIPSFPPKVKFSYGGNALLGVSGGGGGSGNGSSSSSGDAPSGSPSKGSSSTSLSPGLIAGIAIIAVFFVAVVLFVFCKCYAKNRSRKFGRVSNPETGKGEVKIDMVSASNANGFGGGGGAASELQSQGSEPSEQLPVFEGGNATISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAMGTKGMNEFQAEIAVLSKVRHRHLVALLGYCMNGNERLLVYEYMPQGTLTQHLFDWNENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTVPDDRSHLVSWFRRIQINKENIPKAIDQTLDPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTNHEEEEGYGIDLHMSLPQALRRWQANEGTSTMFNDMSFSSQTQSSIPAKPSGFADSFHSTDCR 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151543g00001 942 MobiDBLite consensus disorder prediction 460 486 - -
Stsc151543g00001 942 Gene3D Ribonuclease Inhibitor 334 457 IPR032675 -
Stsc151543g00001 942 MobiDBLite consensus disorder prediction 462 486 - -
Stsc151543g00001 942 MobiDBLite consensus disorder prediction 910 929 - -
Stsc151543g00001 942 SUPERFAMILY Protein kinase-like (PK-like) 569 878 IPR011009 -
Stsc151543g00001 942 Pfam Protein tyrosine and serine/threonine kinase 596 867 IPR001245 GO:0004672|GO:0006468
Stsc151543g00001 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Stsc151543g00001 942 Gene3D Transferase(Phosphotransferase) domain 1 671 892 - -
Stsc151543g00001 942 CDD STKc_IRAK 599 872 - -
Stsc151543g00001 942 FunFam receptor protein kinase TMK1 671 888 - -
Stsc151543g00001 942 Gene3D Ribonuclease Inhibitor 31 331 IPR032675 -
Stsc151543g00001 942 FunFam Leucine-rich repeat receptor-like kinase 335 458 - -
Stsc151543g00001 942 PANTHER OSJNBA0070M12.3 PROTEIN 21 942 - -
Stsc151543g00001 942 MobiDBLite consensus disorder prediction 910 942 - -
Stsc151543g00001 942 ProSiteProfiles Protein kinase domain profile. 593 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151543g00001 942 FunFam Receptor-like kinase TMK4 34 331 - -
Stsc151543g00001 942 FunFam receptor protein kinase TMK1 555 670 - -
Stsc151543g00001 942 SUPERFAMILY L domain-like 49 438 - -
Stsc151543g00001 942 SMART serkin_6 593 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151543g00001 942 Gene3D Phosphorylase Kinase; domain 1 555 670 - -
Stsc151543g00001 942 Pfam Leucine rich repeat N-terminal domain 335 371 IPR013210 -
Stsc151543g00001 942 Pfam Leucine rich repeat N-terminal domain 35 69 IPR013210 -
Stsc151543g00001 942 ProSitePatterns Protein kinases ATP-binding region signature. 599 621 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151543g00001 Stsc-Chr151543 17886 21529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151543g00001 74 869 Receptor kinase-like Gene Family AT5G07280 33.131 9.78e-96 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc151543g00001 PK_Tyr_Ser-Thr 5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151543g00001 K00924 - gmx:100781851 1307.35