Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151542g00003 ATGATAACTGACGATGATATATTCGCGAGCTCTTCACCCTATGAGCCATTATCAATGTCCTCTGCCAACTGCATGGACGATTTGCTAGCAGCTATAGGCTACAACAAGGTCCGATCAAACGACGGCATGGCTGACGTGCCGCAGAAGCTCGACCATCAGCTCCAAACGGCGGCGATGATGGGCAATAATGTCAATGCACGCCAAGACGGAACCTCTTCCAATAACGTCGCTTCAAACGACGCCGTCGTTCACTACAACGACCCCAACGATGTCTTCAACTGGGACCAAACCATGCTCACCAACACCAACAACCAAAACGACACCACAATTACCAATTCGATGCCGTTTACGCAAATTCTCGAGGACCCTTTACAGTATCACATTCTCAACGGAAACTCAGCCACCGACTTTAGAGCGGTTACCGAAACCGTAAAACCGCAAGGGGAGCCACACGCAGTCCTCACGCGCCCTAGTGGAGTGATCGAAGACACTGGCGTGCGTCTGGTTCACGCGCTCATGGCGTGCGCGGAGGCAATCCAGGAAGGAAACCTTGACCTCGCTGACGTGCTCGTGCGCCACGCGTCGCTCCTTGCGTCTCAGCAGGGCGGTGCAATGCGGAAAGTCGCCACGAACTTCTCTCACGCGTTAGCGCGTCGAATTTACGGCGCGTACCCAAACGACTCCATCTCCATGAGCCCCTCTCTCTCAGACATGCTCCACGTCCACTTCTACGAGGCCTGCCCGTACCTCAAATTCGCGCACTTCACCGCTAACCAAGCGATTCTAGAAGCTTTCTCCGCTGCAACCACCGTCCACGTCATCGATTTCGGCCTGAAGCAGGGGCTTCAGTGGCCACCGCTCATGCAGGCACTGGCACTCCGTCCAGGTGGACCACCGGCTTTCCGGTTAACCGGAATCGGACCTACCTCTCCGGATAACAACACCGACACACTTCAACAAGTCGGTTGGAGGCTCGCGCAGCTCGCGAGAACGATTCGAGTTCGGTTCGAGTTCCGCGGATTCACCTGTAACAGCCTCTCAGATCTTGATCCAACTGTTCTTGATATCAGACCAGGAGAATCCGTGGCGGTTAACTCCGTCTTCGAGCTTCACCGTTTGCTCGCCAAGCCCGGTTCGCTTGAGATGGTTTTGAACACAGTTAAAAGAATCGAACCGGAGATAGTTACGGTGGTGGAGCAGGAAGCGAACCATAACGGTCCTGTGTTTCTTGAACGGTTCACGGAGGCGATGCATTATTACTCGAGTTTGTTTGATTCGATGGAAGGATCGGTTAATAATGAGGACGGGGCTCTTGTGGAGGTTTACTTAGGGAGGCAGATATGCAACGTTGTGGCGTGCGAAGGAGAGGAGCGTGTGGAGCGGCATGAGACGCTGGCTCAGTGGAGAAATAGGATGGGTTCGGCCGGGTTCGAACCAGTTCGGCTCGGTTCGAATGCGTTTAGGCAGGCTAGGATGTTGTTGGCGCTGTTCGCCGGAGGAGAAGGGTATAGGGTGGAGGAGAATGACGGGTGTCTCTTGCTCGGTTGGCAAACGAGGCCACTCATTGCGACATCTGCGTGGAGAGTTGGCGGCGGCGCCCGCCGCCATTGA 1611 0.5493 MITDDDIFASSSPYEPLSMSSANCMDDLLAAIGYNKVRSNDGMADVPQKLDHQLQTAAMMGNNVNARQDGTSSNNVASNDAVVHYNDPNDVFNWDQTMLTNTNNQNDTTITNSMPFTQILEDPLQYHILNGNSATDFRAVTETVKPQGEPHAVLTRPSGVIEDTGVRLVHALMACAEAIQEGNLDLADVLVRHASLLASQQGGAMRKVATNFSHALARRIYGAYPNDSISMSPSLSDMLHVHFYEACPYLKFAHFTANQAILEAFSAATTVHVIDFGLKQGLQWPPLMQALALRPGGPPAFRLTGIGPTSPDNNTDTLQQVGWRLAQLARTIRVRFEFRGFTCNSLSDLDPTVLDIRPGESVAVNSVFELHRLLAKPGSLEMVLNTVKRIEPEIVTVVEQEANHNGPVFLERFTEAMHYYSSLFDSMEGSVNNEDGALVEVYLGRQICNVVACEGEERVERHETLAQWRNRMGSAGFEPVRLGSNAFRQARMLLALFAGGEGYRVEENDGCLLLGWQTRPLIATSAWRVGGGARRH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151542g00003 536 Gene3D - 24 102 IPR038088 -
Stsc151542g00003 536 SMART DELLA_2 26 112 - -
Stsc151542g00003 536 ProSiteProfiles GRAS family profile. 159 528 IPR005202 -
Stsc151542g00003 536 Pfam GRAS domain family 168 528 IPR005202 -
Stsc151542g00003 536 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 118 524 IPR005202 -
Stsc151542g00003 536 Pfam Transcriptional regulator DELLA protein N terminal 26 105 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151542g00003 Stsc-Chr151542 37011 38621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151542g00003 22 529 GRAS Transcription Factor Family AT1G66350 56.870 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc151542g00003 GRAS 4.7e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151542g00003 K14494 - gmx:100799695 589.726