Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151539g00004 ATGAGAGTTATTAGGAGTTGGATTGTAAATAAGAAGAGAAAGTTTGTTGGAGTTGAAGAGAGATTGGAGAAGATGATCAATTGCATGCGTTCTGGGGAGCAGGTGGGTGTTGATGAGATTGGTGGTTATTCATCAGAGTCACTTGCAACAAGGGACTATTCAGCTACAGCCAGTGGCTATTCATCTAGGCCTGGTGCTGCTGAATTTGATGCAAAGTTGGATAACAGCAACATTGAAGAAGCAGAGTCCACACTTCGTGAAAGTGGTTACTTGAACTATGAGGAAGCTAGAGCTTTGCTAGGAAGGCTTGAATATCAGAAGGGTAATTTTGAAGCTGCACTTCATGTATTTGAAGGAATAGACATTGCTGCTGTTGCTCCAAAGATGAAAGTTTCTCTATCTAGAAGATGTGAACCGAATATGAATAGACACCGTTCGCAGAGTGATGCGGCGCCTCCTATGTCCATTCATGCTGTTAGTCTACTTCTTGAAGCTGTTTTACTCAAGGCAAAGTCATTGCAGATTCTTGGAAGGTTTCAAGAAGCTGCTACATCATGCAAAACTATTTTGGACACTGTTGAATCTGCATTACCTGAGGGATGGCCTGAGAATTTTGTTTTAGACAGAAAGTTGCAGGAGACTATAAGAAATGCTGTAGAACTGCTTCCAGAGCTATGGAATCTCTCTGGCTCTCATCAACATGTCATATCATCATTTAGGAGAGCCTTGCTTTATCCATGGAATCTTGACATTGAAACCACTTCAAGAATTCAAAAGGAATTTGCAATCTTTCTTTTGTATAGCGGCTGTGAAGCGAGCCCTCCTTCGCTTCGCTCTCAGTTGGATGGTTCATTCGTCCCAAGAAACAATATAGAAGAGGCTGTTCTCTTGCTTCTTATTCTTCTGAGAAATTCTGCTATTGGAAGCATTGAATGGGACCTTTCAATAGTTGATCATCTTTCTTTTGCTCTAACTGTTTCCGGGGAATTCAAGACACTGGCTCAACAGGTTGAGGAATTGCTTCCTGAAACCATGGAGAGAAAAGAAAGACATTATACTCTAGCACTTTGTTACTTTGGTGAAGGTGAGCACATGATTGCTTTGGATCTTTTGAGGAACTCTTTGAATGATAGAGAGAACTCAGAGTGCGAACAGGAACTGCTTCTAGCTTCAAAAATTTGTGCAGACAACTTGGTTTGTGTTGAGGATGGAATCAAATATTCTTGCAAAGCAATTTCTCAGTTGGATGGAAAATGCATGCAAGTGGAAGCAATTGCATATTGTTTACTAGGTGTTCTTCTCTCTTCGAAATCCAGGTCGATAGCTTCTGATTCAGAGAGAGTTTTAATGCAATCAGAAGCATTGAGAGCTCTGGAAACGGCCGAGAGAACAATGAGGGAAAGTGATCCATACATAGTTTATCATCTTTGTCTAGAATACGCTGAGCAGCGGAACTTGAGCATTGCTTTTTGTCATGCAAAAGAACTTATTAAGCTTGAGGGTGGATCTAATGTAGCTTCATATATATTACTTGCAAGGATTTTATCAGCTCAAAAGAATTTTATGGATGCAGAGTTGGTTATTGATGCTGCCATAGATCAAAGTGGGAAATGGGATCAAGGAGAGTTGTTGAGAACCAAAGCGAAACTCCGGATTGCACAGGGAAGATTAAGGAGTGCAGTGGAGACATATACCTTCCTCCTTGCTGTGCTTCAAGTCCAAAACAAAAGTTTAGGCACTGCAAATAAGGTTATCAAGAGTAAGAGAAACCGCAACAGAAATCTGGAGATGGAAATATGGCATGATTTGGCCAACTTGTACATAGCTTTATCACAGTGGAAAGATGCTGAAGTTTGTCTTGCAAAGTCTAAGGCTATTAATCCCTATTCTGCTTCAAGATGGCACACCACAGGTTTACTTTTCAAGGCCAGAGAGCAGCTGCAAGAAGCATTGAAATCATTTAGAAAAGCACTAGATATTGAACCAAATCATGTGCCAAGTTTGATATCAACAGCATGTGTTCTGAGACAGCTTGGTGGCCAATCATCTTCAATTGTGAGAAGCCTTCTGAGTGATGCACTAAAGCTTGACAGAACAAACCCAAATGCTTGGTACAATCTTGGACTGCTCTACAAAGATGATTTGGGGACATCTACATTGGAAGCTGTTGAGTGCTTTGAGGCTGCTGCTCATCTTGAAGAATCTTCTCCCATTGAACCATTTAGATAG 2229 0.4092 MRVIRSWIVNKKRKFVGVEERLEKMINCMRSGEQVGVDEIGGYSSESLATRDYSATASGYSSRPGAAEFDAKLDNSNIEEAESTLRESGYLNYEEARALLGRLEYQKGNFEAALHVFEGIDIAAVAPKMKVSLSRRCEPNMNRHRSQSDAAPPMSIHAVSLLLEAVLLKAKSLQILGRFQEAATSCKTILDTVESALPEGWPENFVLDRKLQETIRNAVELLPELWNLSGSHQHVISSFRRALLYPWNLDIETTSRIQKEFAIFLLYSGCEASPPSLRSQLDGSFVPRNNIEEAVLLLLILLRNSAIGSIEWDLSIVDHLSFALTVSGEFKTLAQQVEELLPETMERKERHYTLALCYFGEGEHMIALDLLRNSLNDRENSECEQELLLASKICADNLVCVEDGIKYSCKAISQLDGKCMQVEAIAYCLLGVLLSSKSRSIASDSERVLMQSEALRALETAERTMRESDPYIVYHLCLEYAEQRNLSIAFCHAKELIKLEGGSNVASYILLARILSAQKNFMDAELVIDAAIDQSGKWDQGELLRTKAKLRIAQGRLRSAVETYTFLLAVLQVQNKSLGTANKVIKSKRNRNRNLEMEIWHDLANLYIALSQWKDAEVCLAKSKAINPYSASRWHTTGLLFKAREQLQEALKSFRKALDIEPNHVPSLISTACVLRQLGGQSSSIVRSLLSDALKLDRTNPNAWYNLGLLYKDDLGTSTLEAVECFEAAAHLEESSPIEPFR 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151539g00004 742 SUPERFAMILY TPR-like 542 712 IPR011990 GO:0005515
Stsc151539g00004 742 ProSiteProfiles TPR repeat profile. 631 664 IPR019734 GO:0005515
Stsc151539g00004 742 Pfam Tetratricopeptide repeat 634 664 IPR019734 GO:0005515
Stsc151539g00004 742 Gene3D Tetratricopeptide repeat domain 576 739 IPR011990 GO:0005515
Stsc151539g00004 742 PANTHER PROTEIN NPG1 26 742 IPR043376 -
Stsc151539g00004 742 SUPERFAMILY TPR-like 349 568 IPR011990 GO:0005515
Stsc151539g00004 742 Gene3D Tetratricopeptide repeat domain 66 575 IPR011990 GO:0005515
Stsc151539g00004 742 SMART tpr_5 597 630 IPR019734 GO:0005515
Stsc151539g00004 742 SMART tpr_5 505 538 IPR019734 GO:0005515
Stsc151539g00004 742 SMART tpr_5 631 664 IPR019734 GO:0005515
Stsc151539g00004 742 SMART tpr_5 701 736 IPR019734 GO:0005515
Stsc151539g00004 742 SMART tpr_5 163 196 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151539g00004 Stsc-Chr151539 27093 30785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151539g00004 26 742 Calmodulin-binding Proteins AT4G28600 52.060 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151539g00004 K21843 - gmx:100789469 1126.31