Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151536g00006 ATGAAAAAAGTGATCCCGGCCAACGGAAAAATCTCAAAGGACGCCAAAGAGACGGTGCAAGAGTGCGTATCGGAGTTCATTAGCTTCGTGACCGGAGAAGCCTCCGACAAATGCCAAAGAGAAAAAAGAAAGACCATCAATGGTGATGATATTATATGGGCCATCACAACCCTAGGGTTTGAGGACTATGTGGAACCATTAAAATCCTATCTCCAAAAATATAGAGACATAGAAGGAGAAAAGCTTAATGTCCCAAAGCAACAACGCTCTGAACAAAGGCTACACCATCATCATCAACAACAACATCACCATAACCAAGATGAAAATAATCAAACACTAAATAGTGTATATACTTCAGCAAATCTCATTTCTCATCAACCTCCTTATGTAGGCACCGATCAACCATTTTCATTGCCGTTTTCACCAAATTCAATTCAGAAACAGTTACGACCGCAAGACCAGATTGATTCGGTTGGGCATTGGTATGAGTAA 492 0.4065 MKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKLNVPKQQRSEQRLHHHHQQQHHHNQDENNQTLNSVYTSANLISHQPPYVGTDQPFSLPFSPNSIQKQLRPQDQIDSVGHWYE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151536g00006 163 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 111 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc151536g00006 163 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Stsc151536g00006 163 MobiDBLite consensus disorder prediction 82 109 - -
Stsc151536g00006 163 ProSitePatterns NF-YB/HAP3 subunit signature. 22 38 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc151536g00006 163 Gene3D Histone, subunit A 1 117 IPR009072 GO:0046982
Stsc151536g00006 163 MobiDBLite consensus disorder prediction 133 163 - -
Stsc151536g00006 163 SUPERFAMILY Histone-fold 1 105 IPR009072 GO:0046982
Stsc151536g00006 163 MobiDBLite consensus disorder prediction 133 153 - -
Stsc151536g00006 163 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Stsc151536g00006 163 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Stsc151536g00006 163 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151536g00006 Stsc-Chr151536 30900 31391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151536g00006 1 161 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.269 7.15e-62 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc151536g00006 CBFD_NFYB_HMF 2.2e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151536g00006 K08065 - gmx:100778216 251.521