Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151536g00001 ATGAATAAGATACAAGGTTGTGAGGTTGAGGCCATTGGCATCAACTACAAGATCCACAAACATAAAACTGATCACCCTTTTAAAATCTTCAGCAAATCACCACAACAAGAATTGGAAGAAGAAGAAGAAGAAGAGGAAGATGCTGAAGAAGGAGAAGCAGAAAAAGATTCATCAAAAAGGCCTTGCAGTGGAGGAGGAAGGCATGTTCTCAAGAATGTGAGTTTCAAAGCCAAGCCATGGGAAATCCTTGCAATTGTGGGGCCAAGTGGTGCTGGAAAATCATCACTGCTTGAGATTCTTGCTGGGAAAGTTACTCCACAGACTGGTTCTGTGTTGCTGAATCACAAGCCCGTGGAGAAAGCTCAGTTCAGGAAGCTCTCAGGTTATGTAACACAGAAGGATACTTTGTTTCCATTACTTACAGTTGAAGAAACCATGATGTTCAGTGCAAAGCTAAGGCTAAGGCTCCCTCAGGAGCAGCTCCAATCAAGGGTCAAGTCACTGATCAAGGAGCTCGGGCTTGATCATGTTGCTGGGGCTCGAATTGGTGACGAAAGGGTCCGAGGAATATCCGGTGGCGAAAGGCGCAGAGTCTCTATTGGTGTTGAAGTCATACATGATCCCAAGGTGTTGATTTTGGATGAACCAACTTCAGGCCTTGATAGTACTTCAGCATTGCAAATTATTGATATGCTTAAGGTGATGGCTGATACTAGGGGAAGAACCATAATCCTTAGTATCCATCAACCTGGATTCAGAATTGTGAAGTTGCTCAATTCACTGCTTTTGTTGGCAAATGGTTCTGTTTTACACCATGGCACTGCTGATTTGCTTAGTGTGAATCTGAGGCTAATGGGTTTAGAGCTTCCCCTTCATGTCAATGTGGTTGAGTTTGCCATTGATTCCATTGATGCCTTTCAGCAACAACAGAAATGCAAGCGGTTCCGGGTACAAACGCCGAGGCGATTGCCAGGGACGGCACTGCCACAGAAGAAAGGTGATGATGAACAAGGTGAGTGTAGAAGTGGTAGGTTTACTTTACAACAGCTCTTTCAACAATCCAAGGTGATTGATGAAGAAACTATCAATGCTGGCATGGATTTCACTTGTGATTTTGCTAATTCTAGATTGAGAGAAACTATGATCCTCACTCATAGGTTCTCCAAGAACATCTTTCGTACAAGAGAGCTGTTTGCATGTAGGACTATTCAGATGCTGATTGCAGGGCTTGTTCTGGGATCCATCTTTTGTAATCTCAAGGATGATCTTGATGGAGCAGAAGAAAGGGTTGGTCTATTTGCTTTCGTTTTAACTTTCTTGCTATCAAGCACCATAGAAGCTCTACCAATTTTTCTGCAAGAAAGGGAGATTCTGATGAAGGAGACATCTTGTGGAAGCTACAGAGTATCATCCTATGCTATTGCCAATGGTCTAGTTTACCTACCATTTCTTCTAATCCTAGCCATTTTGTTCTCAATTCCATTATACTGGCTTGTTGGTCTCAACAAGAATTTCATGGCATTTCTACACTTTCTGTTGCTGATATGGCTGATCCTATACACTGCAAATTCAGTTGTGGTCTGTTTCAGTGCCCTGGTGCCTAATTTCATTGTTGGGAATTCAGTCATTGCTGGTGTCATAGGATCATTCTTCTTGTTTTCCGGATATTTCATATCAGAGCATGAGATTCCAAAGTATTGGATATTTATGCATTATATATCTCTCTTTAAGTATCCCTTTGAAGGGTTTCTGATAAATGAGTTCTCCAACTCAGGGAAATGCTTGGAGTACATGTTTGGTGGATGTGTGGTGAGTGGTGAAGATGTGCTTAAAGAAGAAGGCTATGGTGGGGAGAGTAATAGATGGAAAAATGTTGGGGTGATGGTGGGCTTCATCTTGGTTTACAGGTTCATATCCTATGTGATTCTTAGATACAGATGCTCACAGAGGGGGTTCAGGAGTGTGACCATCATCTAA 1977 0.4234 MNKIQGCEVEAIGINYKIHKHKTDHPFKIFSKSPQQELEEEEEEEEDAEEGEAEKDSSKRPCSGGGRHVLKNVSFKAKPWEILAIVGPSGAGKSSLLEILAGKVTPQTGSVLLNHKPVEKAQFRKLSGYVTQKDTLFPLLTVEETMMFSAKLRLRLPQEQLQSRVKSLIKELGLDHVAGARIGDERVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMADTRGRTIILSIHQPGFRIVKLLNSLLLLANGSVLHHGTADLLSVNLRLMGLELPLHVNVVEFAIDSIDAFQQQQKCKRFRVQTPRRLPGTALPQKKGDDEQGECRSGRFTLQQLFQQSKVIDEETINAGMDFTCDFANSRLRETMILTHRFSKNIFRTRELFACRTIQMLIAGLVLGSIFCNLKDDLDGAEERVGLFAFVLTFLLSSTIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSIPLYWLVGLNKNFMAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSFFLFSGYFISEHEIPKYWIFMHYISLFKYPFEGFLINEFSNSGKCLEYMFGGCVVSGEDVLKEEGYGGESNRWKNVGVMVGFILVYRFISYVILRYRCSQRGFRSVTII 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151536g00001 658 MobiDBLite consensus disorder prediction 37 52 - -
Stsc151536g00001 658 FunFam ABC transporter G family member 5 54 315 - -
Stsc151536g00001 658 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 14 638 - -
Stsc151536g00001 658 Pfam ABC-2 type transporter 380 588 IPR013525 GO:0016020|GO:0140359
Stsc151536g00001 658 Gene3D - 40 288 IPR027417 -
Stsc151536g00001 658 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 52 291 IPR003439 GO:0005524
Stsc151536g00001 658 Coils Coil 35 55 - -
Stsc151536g00001 658 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524|GO:0016887
Stsc151536g00001 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 278 IPR027417 -
Stsc151536g00001 658 SMART AAA_5 79 297 IPR003593 GO:0016887
Stsc151536g00001 658 MobiDBLite consensus disorder prediction 27 65 - -
Stsc151536g00001 658 Pfam ABC transporter 70 218 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151536g00001 Stsc-Chr151536 6533 8788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151536g00001 68 296 Calmodulin-binding Proteins AT2G36910 25.207 4.68e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151536g00001 K05681 - gmx:102665974 1076.23