Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151534g00002 ATGGAGGTAGATGATGACTGGGATTTGACCGCAGAGGAACTCGATTCTCTTGAACGCGATGCTTTCCGGAAAATTGCTCAACTTCGTGACTCTTCTGCCACATCTTCTTCTTTTTCTTCTTCTTCTCAACAATTCAATGTGCACCAACAGCAACAGCAGCAGCAGCAGCAGCAGCATCACCATTCTCCAAAACCTCCTTCTTCCAGCCACTCCCAACCCTTCCCACCAAACCCCATTTCAGATTCCCGTCCACAAAGGGTTGATGCTTTGTCTCAAGGAGCTAGAGCATTACCCCCCTCATTGAAACCAGGGACTAAAATAGATGAATCTTCTAAAGAACGGCCGAAGTTTTCTTTCAAATTTTTTCTTCATTCCAGTGGCCAAATTGCAGCGAAATTCCAATATGACCAGGTAGTAATTGCTGCTTTCCGAAGAATCCCTAGAGCTTCTTGGAACGCAAAAGAAAGGTTATGGATGTTCCCGCCTTCTTCCTTGTCAGAAGCAGAGAAGGTTCTTGGAGAATTACCTAATTATAATGTGCAGGTGGAGAAATTAGATCCCTTAGTGCACCGGGCTTTTGTTTCTGCATCTACTGTTCCAGATCTTCGAGATCGATACGACAGGATCCCTAGTTACATTGAATCAAAGCTTTTACCATTTCAGAGAGAAGGTGTAAGGTTTATTTTGCAACATGGAGGACGTGCTCTTTTAGCAGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATTGCTGTAGCTTCATGCATTCAGGACTCATGGCCTGTTCTCGTACTTGCACCATCGTCATTGCGCCTGCAATGGGCTTCTATGATTCAACAATGGCTGAATCTTCCTTCTTCAGATATACTTATTGTCTTACCTCAAAGTGGTGGATCAAACAGAGGAGGCTTCAATATAGTATCCTCAAGTGCCAAAAGCAACATTCGTTTGGATGGACTCTTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTGACAACATTGGATTTTAAGGTTGTTATTGCGGATGAATCACACTATCTGAAGAATGCTCAGGCTAAGAGGACTACTGCAACACTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTTTATCCCGACCGATAGAACTGTTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAAGAATGTTCATGAATACGGTAACCGATATTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGGGCAAGTAATCATGAAGAATTGCACAATTTGATGAAGGCAACAGTGATGATACGTAGGCTTAAAAAAGACGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAGCAAGTCTTCTTAGACTTATCTGACAAGGACATGAAGCAAATTAATGCCTTATTCCGTGAGTTGGAGATGTTAAAAGCCAAAATTAAGGCAGCCAAATCAAAAGATGAGGCCGAATCTCTTAAGTTTACTCAAAAAAATCTGATTAACAAGATATATACTGATTCTGCTGAAGCCAAGATTCCTGCTGTTCTTGAATATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGCTAGATGCAATACACGAGTTCCTTCTTAAGAAAAAAGTGGGTTGCATCAGGATTGATGGAGGTACACCTGCCGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTTTATCAAGGCAGCTGTGCTATCCATTAAGGCTGGAGGAGTTGGATTAACTTTAACCGCTGCAAGCACAGTTATCTTTGCAGAACTATCCTGGACTCCAGGTGACCTAATTCAAGCCGAAGATCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTGGCAAATGATACAGTTGATGACATCATATGGGATGTGGTGCAATTCAAACTGGATAATTTGGGGCAGATGTTAGATGGCCATGAAAACACGTTAGCTGTGTCAAACAATCAGCCATTGAGTAGCCCTGCAAAGCATAATACTATTGAGCATAGCCCTTCAAAGCAGAAAACTCTTGACCAGTTTGTCAGAAGATGTGATAAAGTGGATAGGTCGGAACATCAGCCTGACCCGAAACGACCCCGTCAATCATGA 2163 0.4221 MEVDDDWDLTAEELDSLERDAFRKIAQLRDSSATSSSFSSSSQQFNVHQQQQQQQQQQHHHSPKPPSSSHSQPFPPNPISDSRPQRVDALSQGARALPPSLKPGTKIDESSKERPKFSFKFFLHSSGQIAAKFQYDQVVIAAFRRIPRASWNAKERLWMFPPSSLSEAEKVLGELPNYNVQVEKLDPLVHRAFVSASTVPDLRDRYDRIPSYIESKLLPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVASCIQDSWPVLVLAPSSLRLQWASMIQQWLNLPSSDILIVLPQSGGSNRGGFNIVSSSAKSNIRLDGLFNIISYDLVPKLQNMLTTLDFKVVIADESHYLKNAQAKRTTATLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLSDKDMKQINALFRELEMLKAKIKAAKSKDEAESLKFTQKNLINKIYTDSAEAKIPAVLEYLGTVIEAGCKFLIFAHHQPMLDAIHEFLLKKKVGCIRIDGGTPAASRQQLVTDFQEKDFIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQFKLDNLGQMLDGHENTLAVSNNQPLSSPAKHNTIEHSPSKQKTLDQFVRRCDKVDRSEHQPDPKRPRQS 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151534g00002 720 Pfam Helicase conserved C-terminal domain 517 626 IPR001650 -
Stsc151534g00002 720 CDD SF2_C_SNF 513 637 - -
Stsc151534g00002 720 SMART ultradead3 213 406 IPR014001 -
Stsc151534g00002 720 MobiDBLite consensus disorder prediction 686 720 - -
Stsc151534g00002 720 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 226 398 IPR014001 -
Stsc151534g00002 720 Gene3D - 477 710 IPR027417 -
Stsc151534g00002 720 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 518 669 IPR001650 -
Stsc151534g00002 720 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 712 - -
Stsc151534g00002 720 FunFam Chromatin remodeling factor18 475 715 - -
Stsc151534g00002 720 MobiDBLite consensus disorder prediction 28 67 - -
Stsc151534g00002 720 Coils Coil 469 489 - -
Stsc151534g00002 720 ProSiteProfiles HARP domain profile. 110 186 IPR010003 -
Stsc151534g00002 720 FunFam Chromatin remodeling factor18 190 464 - -
Stsc151534g00002 720 SMART helicmild6 543 626 IPR001650 -
Stsc151534g00002 720 MobiDBLite consensus disorder prediction 673 720 - -
Stsc151534g00002 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 440 IPR027417 -
Stsc151534g00002 720 Gene3D - 196 446 IPR038718 -
Stsc151534g00002 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 674 IPR027417 -
Stsc151534g00002 720 Pfam SNF2-related domain 235 495 IPR000330 GO:0005524|GO:0140658
Stsc151534g00002 720 CDD DEXHc_HARP_SMARCAL1 217 440 - -
Stsc151534g00002 720 MobiDBLite consensus disorder prediction 28 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151534g00002 Stsc-Chr151534 10159 17593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151534g00002 497 646 RAD5 or RAD16-like Gene Family AT1G05120 31.818 4.75e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc151534g00002 SNF2_N 1.1e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151534g00002 K14440 - gmx:100778246 1143.64