Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151533g00001 ATGGGTCATTGCCCATGTTTTGGGCTTAGAAAGAAGGCTGATAAAGAAGAGAAGTTCAAGTCTCAACAAGCGCAACACAACAAGGTTTTTGACAAGAAACTCAATTCTCCACACAATAATGTTTCTGCTGAAAAATATTCAGGACTAACAACACCTGAGGCAACTATTAGAACAAAGGAGACTGACAATTATTATTCTAATCACAAGGCTCATATATTTACCTTCCGAGAGCTTGCAACAGCAACAAAAAATTTTAGGGATGAAACATTTATTGGGCAAGGTGGATTTGGAACTGTTTACAAAGGAAAGCTAGGTAAACTAAATCAGGTTGTAGCTGTAAAACGACTTGATACTAGTGGTGCCCAAGGGGAGAAAGAATTCTTAGTGGAGGTTCTGATGTTGTCTCTTTTACGTCATCCAAACCTTGTTAATTTGATTGGTTATTGTGCTGAAGGGGATCAACGTCTTCTTGTCTATGATTACATGCCTATGGGATCCTTAGAATCTCGTCTCCATGATCTCCCACGTGATAAAGAAGCTCTTGATTGGAACACAAGAATGAAGATAGCAACTGGAACAGCAAAAGGAGTAGACTATTTACACAACAAAGCAGAACCTTCTGTTATATACAGGGATCTAAAATCATCTAACATACTCTTAGACAAGGGTTTTATTCCCAAGCTTTCCGATTTCGGGCTTGCCAAATTCGGTCCAACCGGAGATCAATCCTATGTTGCCACCAGGGTGATGGGAACTCATGGTTATTGTGCTCCTGAATATGCCACAAGTGGGAAACTAACAAGGAGATCTGACATTTATAGTTTTGGAGTTTTTTTGTTAGAGCTTATATCTGGACGTAAAGCATATGATGAGGATCGTGGCCATGACAAGCATCTTGTTGATTGGGCACGCCCAATGTTCAAAGATAGAAAGAACTTTTCAAGATTGGCAGATCCACTACTACAAGGTCATCACCCTGGATCTGGACTAACAATGGCAATTGAATTGGCATCCATGTGTCTCAGAGAAGAGCCACGTCAGCGGCCGGACGCCGCTGACATAGTGCTTGCTCTGGATTTCTTGTCTTCCAAGCAATATGTTCCAAGAGAACCGAACAACCTTGATGAGAAAGACAAAGAGAACAATCATTCTCCAAAAGGAATAATCACAGTTTTGACCAAAGATGAACAAAGAGAGGAAGCTGTAGCAGAGGCCAAGCTATGGGGTAAGACATGGAGAGAGAGAAAGCAAAATGACCAAAGTAGCTTTGAGGAAAGAAATAGATAG 1287 0.4087 MGHCPCFGLRKKADKEEKFKSQQAQHNKVFDKKLNSPHNNVSAEKYSGLTTPEATIRTKETDNYYSNHKAHIFTFRELATATKNFRDETFIGQGGFGTVYKGKLGKLNQVVAVKRLDTSGAQGEKEFLVEVLMLSLLRHPNLVNLIGYCAEGDQRLLVYDYMPMGSLESRLHDLPRDKEALDWNTRMKIATGTAKGVDYLHNKAEPSVIYRDLKSSNILLDKGFIPKLSDFGLAKFGPTGDQSYVATRVMGTHGYCAPEYATSGKLTRRSDIYSFGVFLLELISGRKAYDEDRGHDKHLVDWARPMFKDRKNFSRLADPLLQGHHPGSGLTMAIELASMCLREEPRQRPDAADIVLALDFLSSKQYVPREPNNLDEKDKENNHSPKGIITVLTKDEQREEAVAEAKLWGKTWRERKQNDQSSFEERNR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151533g00001 428 Pfam Protein kinase domain 86 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151533g00001 428 CDD STKc_IRAK 91 355 - -
Stsc151533g00001 428 ProSiteProfiles Protein kinase domain profile. 85 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151533g00001 428 MobiDBLite consensus disorder prediction 370 384 - -
Stsc151533g00001 428 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Stsc151533g00001 428 MobiDBLite consensus disorder prediction 368 387 - -
Stsc151533g00001 428 PANTHER OS07G0668900 PROTEIN 24 370 - -
Stsc151533g00001 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Stsc151533g00001 428 MobiDBLite consensus disorder prediction 409 428 - -
Stsc151533g00001 428 FunFam probable serine/threonine-protein kinase RLCKVII 57 161 - -
Stsc151533g00001 428 SMART serkin_6 85 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151533g00001 428 Gene3D Transferase(Phosphotransferase) domain 1 162 384 - -
Stsc151533g00001 428 FunFam Serine/threonine-protein kinase PBS1 162 377 - -
Stsc151533g00001 428 SUPERFAMILY Protein kinase-like (PK-like) 63 360 IPR011009 -
Stsc151533g00001 428 Gene3D Phosphorylase Kinase; domain 1 46 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151533g00001 Stsc-Chr151533 4622 9071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151533g00001 50 422 Glycoside Hydrolase AT3G07070 54.278 2.46e-135 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc151533g00001 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151533g00001 K13430 - gmx:100805675 562.762