Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151531g00005 ATGGCGGAGCCTCGGAAACAACCGGCTAACAACAGAACAAAGCAAAGGACTCAAGATTCCTCCAAGACCATGGCCAGAAAACTCCGCATAATCTACGCGGATCCCGAAGCAACAGACTCATCAGGCGATGAATCATCGGAGATGAACCAAAAGAGAATCAAGAGGAGAATCCATGAGATCCCTCTCCCTCTTGTTCTCTCCAGCCTCTCCACTCCCACCTCCTCCTCCGAGGTCAATGCAAAGACTCACAACCCCACCATCAAGAGGAGGGTTTCGCCGTCGACCGGCTGCAGGAGGCAAACCTCCGGCAAGTACAGAGGAGTTAGGCAGAGAAAGTGGGGTAAATGGGCTGCTGAGATTCGTGACCCTTTCAAGAGCGCACGCATCTGGTTGGGTACTTACAACACTGCCGAAGAAGCTTCTCAGGCCTACGAAGCTAAAAGGCTCGAGTTCGAAGCCATGGCTAGGTCCATGTCTCACTCACACTCTCAGAGCAACTCATCTCCTGCTCCCGCCGGAGTTTGTGTTTCCGACAACAAGTCCTCTACATCGGAGGATTCCGAAAGCGTTTTCTCGTACACATCTCCTTCCTCTGTTCTTGAGTTGGATACTTGTTCAGCTTCTCATGCTAATGAAGATGTTGAGACTAATGACTTGGTGGCTGAATTGGCTTCCTTGGAGATACCTGATTTGAGCATGCTGAACCTCCCTCCGCCACCCGAACAACCATCTTCTGCGGCTGTCGCTGTTGATGCTTGTGGTTCTGTGCCTGAGATAAGCCTTGGACTCGGTTTTGACTGGCTGAGTTTTGATGATTATGGACATGGGTTTGATGATCTTGGTGGCTTTGAGGATTTACAAATCTGCGGATTGGATGACAATGGGCCAAGCCAACTTCCTGATTTCGATTTTGATGATTTTGGTGGCGATGAGTTTGCTGGTTGGATTGAGGAACCCCTCAATATACCCTGCGCATAA 978 0.501 MAEPRKQPANNRTKQRTQDSSKTMARKLRIIYADPEATDSSGDESSEMNQKRIKRRIHEIPLPLVLSSLSTPTSSSEVNAKTHNPTIKRRVSPSTGCRRQTSGKYRGVRQRKWGKWAAEIRDPFKSARIWLGTYNTAEEASQAYEAKRLEFEAMARSMSHSHSQSNSSPAPAGVCVSDNKSSTSEDSESVFSYTSPSSVLELDTCSASHANEDVETNDLVAELASLEIPDLSMLNLPPPPEQPSSAAVAVDACGSVPEISLGLGFDWLSFDDYGHGFDDLGGFEDLQICGLDDNGPSQLPDFDFDDFGGDEFAGWIEEPLNIPCA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151531g00005 325 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Stsc151531g00005 325 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Stsc151531g00005 325 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Stsc151531g00005 325 MobiDBLite consensus disorder prediction 157 190 - -
Stsc151531g00005 325 CDD AP2 104 151 IPR001471 GO:0003700|GO:0006355
Stsc151531g00005 325 MobiDBLite consensus disorder prediction 68 101 - -
Stsc151531g00005 325 MobiDBLite consensus disorder prediction 1 27 - -
Stsc151531g00005 325 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Stsc151531g00005 325 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Stsc151531g00005 325 MobiDBLite consensus disorder prediction 68 105 - -
Stsc151531g00005 325 MobiDBLite consensus disorder prediction 155 190 - -
Stsc151531g00005 325 PIRSF PTI6 6 237 IPR017392 GO:0003700
Stsc151531g00005 325 PIRSF PTI6 269 309 IPR017392 GO:0003700
Stsc151531g00005 325 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 224 - -
Stsc151531g00005 325 SUPERFAMILY DNA-binding domain 104 151 IPR016177 GO:0003677
Stsc151531g00005 325 MobiDBLite consensus disorder prediction 32 51 - -
Stsc151531g00005 325 Gene3D AP2/ERF domain 103 158 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151531g00005 Stsc-Chr151531 29103 30080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151531g00005 26 324 AP2-EREBP Transcription Factor Family AT1G68550 38.019 9.99e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151531g00005 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151531g00005 - - gmx:100306276 307.375