Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151529g00002 ATGGAATCTTTGGATGCCACCATTTCTTCTAATTCACCGTCGTCTTTATCATCATCATCATCATCTTCTAGTGTTGTGAATAATAATGTTAATATTAGTAGTGTAAGTAATGATAACAATGTTAATAGTAATAGTAATGGTGGAACTGTGACATGGTATGGTGTGAGGTTACCATTTGTTAGCCCTTTACGTTCCCCACTTTCCTTTCTCTTGGATTACTCTGGCATTCTAAGATCAAGCCATGATTCTGAGAGTTTGGTTGTGAACAATGGTGGTGTTACGGGTCTAGAATTGGGGTCCGAGTCTCGGATTCAACCACCTAATGATGCTGGTGGTGTTGCTTCCGGGACACCCTGCAACAACAGTGCTGCTGGGGAGGTTGCAATAAGGATCATTGGTGCTGGAGAGCATGATCACAATGTGGGGTTAGGTTCTTCTGTTCCCTCATCGTCGAGGAGTCAGATTGGAGAAGTGGGGTATGATGGTCGTGTTGAGATGATTGCTGATAGAGGTGGAATTGATGATGATGCCGAGGGTCGTCGCAGTGGAGTTGCGGCCAGCGAGAGGGTTCCTCTGGTGCCTCCAGCTTCTTCGTCATCTGTGGCTGGTGGTAGTGGGCAGGCTGATGGTGATGCGGGGAATGGTGTAGATAGTAACAATAGGGACTCATCAAACTACCAGAGATATGATATTCAGCAGATCGCAAAGTGGATTGAGCAGATTCTTCCTTTCTCACTCTTGTTGTTGGTTGTTTTCATCCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTAAAGGGGGATAGGAAAGTCTCAGTTCTTGTTGGTATATCTATTGCCTTCATGCTTCATGTGATGTTCATTTATTGGTGGTACCGAAATGATGATCTTTTATACCCACTCGTGTTGGTTCCTCCAAAAGCAACACCTTTCTGGCATGCAATATTTATCATCCTGGTTAATGATGCATTGGTGCGGCAGGCAGCAATGGCCTTCAAGTGTATTCTGTTAATATATTACAAAAGTGGCAGAGGTCATAGCTTTCGTCGGCAGGCTCAAATGTTAACACTGGTTGAGTACACACTGCTATTGTATCGTGCCTTGTTACCAACACCCGTTTGGTACCGGTTTTTCTTAAACCGGGCATATGGCAGTCTCTTTTCATCCCTGACCACAGGGTTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAATGCTTTATATCTGCCTTAAAAGCATTGTCAAGAAAGGAAGTTCATTATGGGGTTAATGCCACAATGGAGCAGGTTAATGCTGCTGGTGACTTATGCGCCATATGCCAGGAGAAAATGCATGCCCCAATATTGTTGCGCTGCAAACACATTTTCTGCGAGGAGTGTGTATCGGAATGGTTTGAAAGAGAAAGGACATGCCCTCTATGCAGAGCATTGGTAAAGCCTGCTGATCTGCGTACCTTCGGAGACGGATCAACGAGTCTCTTTTTCCAGTTGTTCTAG 1560 0.4404 MESLDATISSNSPSSLSSSSSSSSVVNNNVNISSVSNDNNVNSNSNGGTVTWYGVRLPFVSPLRSPLSFLLDYSGILRSSHDSESLVVNNGGVTGLELGSESRIQPPNDAGGVASGTPCNNSAAGEVAIRIIGAGEHDHNVGLGSSVPSSSRSQIGEVGYDGRVEMIADRGGIDDDAEGRRSGVAASERVPLVPPASSSSVAGGSGQADGDAGNGVDSNNRDSSNYQRYDIQQIAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISIAFMLHVMFIYWWYRNDDLLYPLVLVPPKATPFWHAIFIILVNDALVRQAAMAFKCILLIYYKSGRGHSFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNRAYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEVHYGVNATMEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151529g00002 519 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 27 519 IPR044235 GO:0061630|GO:1904294
Stsc151529g00002 519 Pfam Zinc finger, C3HC4 type (RING finger) 456 499 - -
Stsc151529g00002 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 506 IPR013083 -
Stsc151529g00002 519 SUPERFAMILY RING/U-box 449 501 - -
Stsc151529g00002 519 SMART ring_2 458 495 IPR001841 -
Stsc151529g00002 519 ProSitePatterns Zinc finger RING-type signature. 473 482 IPR017907 -
Stsc151529g00002 519 CDD RING-HC_RNFT1-like 456 496 - -
Stsc151529g00002 519 ProSiteProfiles Zinc finger RING-type profile. 458 496 IPR001841 -
Stsc151529g00002 519 MobiDBLite consensus disorder prediction 172 222 - -
Stsc151529g00002 519 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151529g00002 Stsc-Chr151529 3080 11037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151529g00002 63 519 C3H Transcription Factor Family AT5G01960 60.173 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151529g00002 - K22379 qsa:O6P43_020068 646.351