Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151524g00003 ATGCAATTTGCAAAGCTAGATGACTCTCCTATGTTCCGGAAGCAGATTCAATGCATGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTAAAGTTTTACAAAGGATGTAGAAAATATACTGAAGGACTCGGGGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTTGAAACTTTTGGTGGTGGGCATAATGATCCCATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCTTTGCGAGAAATCGGGACATATAAGGAGGTCCTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGCTCCAGTTTGTCAATATTGATTTGCAAGAAGTCAAGGAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGACTCGTGAAAGGTTTCTGTCACTGAGAAAAGGCACAAAAAGTGAAGTAGCTAATGCCCTAGAAGAGGAGCTTCATAATGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGGTTTGAATTCTTGGAAGCAGTTAGTGGGACAATGGATGCGCATCTTCGTTACTTCAAACAGGGGTATGAATTGTTGCACCAGATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAGTCAAGAGAAAGGTCCAACTATGAGCAGGCGGCTCTCAATGAAAGAATGCAAGAATACAAAAGGCAGATTGACCGAGAGAGTAGATGGGCTTCAAACGGTTCTAGCGGATCTCCTAATGGAGATGGCATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCCAAGGGAAAGGTCCAAACTATTCGACAGGGTTATCTCTCGAAGCGTTCGTCAAACTTAAGAGGGGATTGGAAAAGGAGGTTTTTTGTTCTTGACAGTCGGGGATTGCTGTATTACTACCGTAAACAAGTCAGCAAGTCATCGGCAGAGAGCGCACTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCCTCATTGTTGAGTTCTCAGATTCCTGAAAGGTTGTTACCTGCAAGTCCAATGGGAAGTGCTCATAACAGGTCCACAAGCGAGAGTAGTTCTTTTGAAAGTTCAGATTTCGATCACACAGCTATTGAAGAATTTGCAGCAGAGAGAAATCCCGCTGCTTCAAGTGTGGACCGCACCTCGAGAAGTTTGCAGCAGCAGCGATCCGGTATTAAAAGTGAGAAGCCTATTGATGTGTTACGAAAAGTTTGTGGGAATGATAGATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCATCATTAAATCTTGGTGTTCTTGTTTGCATCGAGTGTTCTGGTGTTCATCGAAACCTTGGTGTACACATATCAAAGGTCAGGTCACTTACGTTGGATGTTAAAGTGTGGGAGCCTTCTGTAATAAGTTTGTTTCAGTCTCTTGGGAATACTTTTGCCAACTCTGTCTGGGAGGAACTATTGCAATCGAGAAGTGGCTTTCAGGTTGACCTTGTTTCTTCAGGGTTAAGCAGGTCTGATAAATCACTGGCACTTTTCATCAGCAAACCTTCTCAATCCGAGTCTCTATCTGTTAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCGCAAACCAAAGGACAGCCAATACCGGCTACTGGTGGCCCAACAGATATGGGAAGCAGTTCGTGCTAATGACAAAAAGACTGTGTACCGATACATAGTTAATTCTGACATTGATGTCAATGCTGCTTATGAACAAATGTGTAGCAGCTCTTTAACCCTTGCTAAAGTGATGCTATTACAAGAGCAGACAAACCATGATCACAGCTCTATAGCAGGAAACACATTGGACTGGTCCTCTGCTAGCTCTTTGAACGTAGGCTCTAAAGAAGGGCGTGTCCTTAACCTAGATGGGTCTACCCTACTTCATCTTGCTTGTGAAACTGCAGATATTGGCATGCTGGAGCTCCTTCTACAGTATGGTGCAAATGTAAATGCAACCGATTCGAGAGGTCAAACGCCATTGCATCGCTGTATTCTCAAAGGCAAATCTACATTTGCAAGATTACTTCTTTCAAGAGGAGCTGATCCTCAAGCTGTGGATGATGAGGGAAGAACCCCTATTGAGCTCGCTGCGGAGTCAAATGCCGATGACAGACAAGTCCATGCTCCATCAACTGATTCTAATGGATGA 2259 0.4356 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKSEVANALEEELHNARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSSGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGLLYYYRKQVSKSSAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSAHNRSTSESSSFESSDFDHTAIEEFAAERNPAASSVDRTSRSLQQQRSGIKSEKPIDVLRKVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSGFQVDLVSSGLSRSDKSLALFISKPSQSESLSVKEKFIHAKYAEKLFVRKPKDSQYRLLVAQQIWEAVRANDKKTVYRYIVNSDIDVNAAYEQMCSSSLTLAKVMLLQEQTNHDHSSIAGNTLDWSSASSLNVGSKEGRVLNLDGSTLLHLACETADIGMLELLLQYGANVNATDSRGQTPLHRCILKGKSTFARLLLSRGADPQAVDDEGRTPIELAAESNADDRQVHAPSTDSNG 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151524g00003 752 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 407 571 - -
Stsc151524g00003 752 SUPERFAMILY ArfGap/RecO-like zinc finger 425 565 IPR037278 -
Stsc151524g00003 752 Pfam Ankyrin repeats (many copies) 679 733 IPR002110 GO:0005515
Stsc151524g00003 752 Pfam Putative GTPase activating protein for Arf 428 565 IPR001164 GO:0005096
Stsc151524g00003 752 ProSiteProfiles ARF GTPase-activating proteins domain profile. 425 570 IPR001164 GO:0005096
Stsc151524g00003 752 Gene3D - 288 335 IPR011993 -
Stsc151524g00003 752 ProSiteProfiles Ankyrin repeat profile. 659 691 IPR002110 GO:0005515
Stsc151524g00003 752 MobiDBLite consensus disorder prediction 253 269 - -
Stsc151524g00003 752 SUPERFAMILY Ankyrin repeat 582 738 IPR036770 -
Stsc151524g00003 752 CDD ArfGap 428 557 - -
Stsc151524g00003 752 ProSiteProfiles PH domain profile. 292 332 IPR001849 -
Stsc151524g00003 752 MobiDBLite consensus disorder prediction 402 422 - -
Stsc151524g00003 752 Coils Coil 151 171 - -
Stsc151524g00003 752 MobiDBLite consensus disorder prediction 371 386 - -
Stsc151524g00003 752 Gene3D - 570 741 IPR036770 -
Stsc151524g00003 752 SMART ANK_2a 659 688 IPR002110 GO:0005515
Stsc151524g00003 752 SMART ANK_2a 692 721 IPR002110 GO:0005515
Stsc151524g00003 752 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Stsc151524g00003 752 CDD BAR_SFC_plant 14 215 IPR035670 -
Stsc151524g00003 752 ProSiteProfiles Ankyrin repeat region circular profile. 692 724 - -
Stsc151524g00003 752 PRINTS HIV Rev interacting protein signature 437 456 IPR001164 GO:0005096
Stsc151524g00003 752 PRINTS HIV Rev interacting protein signature 479 500 IPR001164 GO:0005096
Stsc151524g00003 752 PRINTS HIV Rev interacting protein signature 456 473 IPR001164 GO:0005096
Stsc151524g00003 752 MobiDBLite consensus disorder prediction 718 752 - -
Stsc151524g00003 752 Gene3D Arf GTPase activating protein 406 569 IPR038508 -
Stsc151524g00003 752 MobiDBLite consensus disorder prediction 366 386 - -
Stsc151524g00003 752 ProSiteProfiles Ankyrin repeat profile. 692 724 IPR002110 GO:0005515
Stsc151524g00003 752 PANTHER CENTAURIN/ARF 3 329 IPR045258 GO:0005096
Stsc151524g00003 752 SUPERFAMILY PH domain-like 248 352 - -
Stsc151524g00003 752 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Stsc151524g00003 752 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Stsc151524g00003 752 MobiDBLite consensus disorder prediction 405 422 - -
Stsc151524g00003 752 Coils Coil 227 247 - -
Stsc151524g00003 752 ProSiteProfiles Ankyrin repeat region circular profile. 659 690 - -
Stsc151524g00003 752 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Stsc151524g00003 752 SMART arf_gap_3 425 570 IPR001164 GO:0005096
Stsc151524g00003 752 MobiDBLite consensus disorder prediction 248 270 - -
Stsc151524g00003 752 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151524g00003 Stsc-Chr151524 11084 17665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151524g00003 437 564 C2H2 Transcription Factor Family AT4G21160 39.535 6.42e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151524g00003 K12489 - smo:SELMODRAFT_451405 840.106