Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151524g00002 ATGCTCATTTTGGAGCTTCTGAAGTTGGATTTTGGTTGTGCCTTTGTTTGTTCTACTGAAATGGTTAGAAAAGGTAGCAACCCTTGTTCTTTTTCAAGGGTGTTTTTGGCATTCCTTCTGGTGTTCTTGTTCAGCTTGAGCAATAACACTGTTGAATGCCATGGAAGGTTGAGTTTTAAGCATATCTCTTCTGAGGCTCCATCATCATCATCACCTTCTTGGCCAACACCAACACCATCATCACCATCATTATACAAGGATGAACCTAAGAAGATTATTCTGAGTATAGTTTTAGGAGCAGTAACTGGACTAGTTGGTTCTGTAATCTTTGCATTTGTGGTTCGTTGTGTTGTTCAGTACCTTAACAGAACACCAATCCTCAAGGGCCCTGTCATATTCTCCCCAAAGATTGCCCCCAAGACGCTCCAATCGGCGTTGGCGAAAGAAAACCACTTGCTTGGTTCGAGTCCAAATGGGAAATACTACAAAACTGTTCTTGACAATGGCCTCACAGTTGCAGTCAAAAGGCTAACACCCTTTGAGAGCAATTCACCTGAGACTAAGAAAAAATCGGTTAAGAGGCAGATACAGAAGGAGCTCGAGCTTCTCGCCGGATTAAGGCACCGAAACTTGATGAGCTTGAGGGCTTATGTGAGGGAGCCTGATACATTCTTATTGGTTTATGATTATATATCGACCGGTAACCTCGCAGATGTCATGAATAGAGTTAGGGAGAATGAGTTGCAGCTTAATTGGGAAGTTAGACTTAAAATCGCCGTTGGTGTTGTGAAGGGTCTTCAGTATCTTCACAATTGTGTTCCTCAAGTTCTACACAACAACTTGAAGCTCACAAATGTGATGCTGGATGCAGAGTTTGAACCGAAATTAGCAGATTATGGATTGGCTAAGCTTCTTCCAAACTTGGATAGAGGGACTAGTACTCCTCCTGAATGTTTCCATAGTTGCAGGTACACTGACAAAAGCGACATATTCAGTTTCGGCATGATACTCGGCGTTTTACTGAGTGGAAAGGACCCTACAGATCCATTCTTTGGGGAACCAGCAAGTATGGGAAGCATGGGGGGTTGGCTAAGGCACTTGCAGCAACAAGGCGATGCGAAAGAGGCTCTGGATAAGAGCATTCTCGGCGAAGAAGGCGAGGAAGATGAGATGCTAATGGCCGTGAGAATCGCTGCTGCATGCCTCTCCGATATGCCTGCAGAGAGGCCTTCCAGTGATGATCTTGTTCTCATGCTAACTCAACTCAACAGTTTTTAG 1278 0.4421 MLILELLKLDFGCAFVCSTEMVRKGSNPCSFSRVFLAFLLVFLFSLSNNTVECHGRLSFKHISSEAPSSSSPSWPTPTPSSPSLYKDEPKKIILSIVLGAVTGLVGSVIFAFVVRCVVQYLNRTPILKGPVIFSPKIAPKTLQSALAKENHLLGSSPNGKYYKTVLDNGLTVAVKRLTPFESNSPETKKKSVKRQIQKELELLAGLRHRNLMSLRAYVREPDTFLLVYDYISTGNLADVMNRVRENELQLNWEVRLKIAVGVVKGLQYLHNCVPQVLHNNLKLTNVMLDAEFEPKLADYGLAKLLPNLDRGTSTPPECFHSCRYTDKSDIFSFGMILGVLLSGKDPTDPFFGEPASMGSMGGWLRHLQQQGDAKEALDKSILGEEGEEDEMLMAVRIAAACLSDMPAERPSSDDLVLMLTQLNSF 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151524g00002 425 ProSiteProfiles Protein kinase domain profile. 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151524g00002 425 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 139 230 - -
Stsc151524g00002 425 SUPERFAMILY Protein kinase-like (PK-like) 150 419 IPR011009 -
Stsc151524g00002 425 Gene3D Transferase(Phosphotransferase) domain 1 231 424 - -
Stsc151524g00002 425 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 45 421 - -
Stsc151524g00002 425 Gene3D Phosphorylase Kinase; domain 1 136 230 - -
Stsc151524g00002 425 Pfam Protein kinase domain 149 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151524g00002 Stsc-Chr151524 6403 8589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151524g00002 60 422 Receptor kinase-like Gene Family AT2G31880 32.178 2.62e-62 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Stsc151524g00002 Pkinase 1.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151524g00002 - - vra:106759565 602.438