Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151515g00003 ATGGTGCTTCAGCTTCACAATCAAATTGAGGTTAGGGTGAAGATTAAGGTGGTAACTGGTACTCCAAGTGGTGCTGTAGCAGCTGAAGCCAGATGGAGTGGCTCTCATTGGGTCATACTGGACAAGAAGTTAAAGCAAGAGGTAAAGCATTGCATGGATGAACTCAACTGTAGCATTGTGGTTATGAAAGGCTCAAAACCAAAAGTTCTCAGGCTTAACTTAGGATGCTCTGATGAACTCCAAACTCCATTTTTCTCTGCTGCTACTTCACCGGATATAGCAATTGGAAAGTTCAAAGGCCGCAGATTGAAGCATTCAACCCCAGTGAGTAGCCCTGAAGAACCAGGTACTTCTGCCACCAGAACCATTGGAGTTGACTCAGAGTCAAGTTCTGACTCAATGGCTTCTCTTTTCCAAGTCTATGAGCAAAATCCACTGTACGAGGGACTGCACAACAAAAGAACACACCAACCAATCAATGAGCCCAAAGAGTTCAACTTCCCGCCACAATTATACTTTGATTTGGAAAAGGATTGCCCTCCCACAATGGGGACACATCCAATCCCACATGCGTCCAGTGATAACAAGGATGTATTTTGGACTCCTCCTCAAAACCACATTTTGAATGAGAAGCTTCAAAAAACAGAAAAGAACATATTTACCCAAAGAACCAAATCTCCAACTCCCAAAACACTACTTGAGAATTTTAGACATTGTGATCAAGAAATGAAAAGGACAAATAATGAACTTGGGTTTAACCAATNNNNNNNNNNAAACTTGGGCAACAGAGGTAATGCCACCATTCCTATGGGCAGAACTTCGTGTATACCTCCTCCCTTGTGCTCTCAGTGTCAGAACAAAGCACCAGTGTTCGGAAAACCTCCTAGACAGTTTTCTTTCAAGGAGATAGAGGAAGCTACTGATATGTTCTCAGATGCGAATTTTTTAGCTGAAGGTGGATTTGGTATTGTCCACAAGGGAATTCTCAGAGATGGCCAGGTTGTTGCTGTGAAACAGTTAAAGTTCGGAGGCTCTCAAGCTGATCTTGATTTCTGCAGAGAAGTTCGTGTTTTGAGCTGTGCACAACACAGAAATGTTGTGTTGTTGATAGGATTTTGTGTAGAGGCCAATTTGAGAATATTAGTCTATGAGTACATATGCAATGGATCCTTGGACCTTTACTTACATGGAGATGAGAATACACCCTTGGATTGGAACTCACGGTTAAAGATAGCAATTGGAGCTGCAAGAGGGTTACGCTACCTTCATGAAGATTGCAGAGTTGGTTGCATAGTGCACAGAGACTTTCGACCCAGGAATATTCTCTTAACGCATGACTTTGAACCTTTGGTGGCTGATTTTGGGCTTGCTAGATGGCACTCAGAATGTTATATAAATACTGAACAAGATCGAGTTGTAGGAACGTCAGGGTATCTTGCCCCAGAGTATCTTGAAGCTGGAAATCTTACATACAAAGTAGACGTATATGCATTTGGAATCGTTTTACTAGAGTTAATAACAGGTCGAAGAATCAGTGACTTGGAACAATATAATGGGCACTCATTTCTTTCTCAATGGTTTCATCCCATACGCATGTTAGAGCCAGATCATATATTGCAAAACGTTCGGTCTCTTAACCCATACTTAGGCTTTGAGGCCTCATTGGAATTTAACCTTCAATTACAAGCCATGGCAAGAGCTGCTTCATTGTGTCTACGTCTGGATCCTGATGCAAGACCTCCAATGTCCAAGATACTGAGAGTACTGGAAGGGGGTGATGCAGTTCGTCCTATTGGTTTAGACTTCAATTCAGTTGGTAATAGAAGTGGCCATTTAAGTGGTTTGAGTTCTCACACTCCACCTAAAGGTACTATAAGTCATTCTCGTAGGTTATCACATTGA 1902 0.4185 MVLQLHNQIEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEVKHCMDELNCSIVVMKGSKPKVLRLNLGCSDELQTPFFSAATSPDIAIGKFKGRRLKHSTPVSSPEEPGTSATRTIGVDSESSSDSMASLFQVYEQNPLYEGLHNKRTHQPINEPKEFNFPPQLYFDLEKDCPPTMGTHPIPHASSDNKDVFWTPPQNHILNEKLQKTEKNIFTQRTKSPTPKTLLENFRHCDQEMKRTNNELGFNQXXXXNLGNRGNATIPMGRTSCIPPPLCSQCQNKAPVFGKPPRQFSFKEIEEATDMFSDANFLAEGGFGIVHKGILRDGQVVAVKQLKFGGSQADLDFCREVRVLSCAQHRNVVLLIGFCVEANLRILVYEYICNGSLDLYLHGDENTPLDWNSRLKIAIGAARGLRYLHEDCRVGCIVHRDFRPRNILLTHDFEPLVADFGLARWHSECYINTEQDRVVGTSGYLAPEYLEAGNLTYKVDVYAFGIVLLELITGRRISDLEQYNGHSFLSQWFHPIRMLEPDHILQNVRSLNPYLGFEASLEFNLQLQAMARAASLCLRLDPDARPPMSKILRVLEGGDAVRPIGLDFNSVGNRSGHLSGLSSHTPPKGTISHSRRLSH 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151515g00003 633 PANTHER OS01G0750732 PROTEIN 238 591 - -
Stsc151515g00003 633 MobiDBLite consensus disorder prediction 110 129 - -
Stsc151515g00003 633 FunFam Os07g0541700 protein 386 475 - -
Stsc151515g00003 633 MobiDBLite consensus disorder prediction 176 202 - -
Stsc151515g00003 633 SUPERFAMILY Protein kinase-like (PK-like) 290 589 IPR011009 -
Stsc151515g00003 633 Gene3D Phosphorylase Kinase; domain 1 279 385 - -
Stsc151515g00003 633 MobiDBLite consensus disorder prediction 104 129 - -
Stsc151515g00003 633 ProSitePatterns Tyrosine protein kinases specific active-site signature. 431 443 IPR008266 GO:0004672|GO:0006468
Stsc151515g00003 633 Gene3D Transferase(Phosphotransferase) domain 1 386 596 - -
Stsc151515g00003 633 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 282 385 - -
Stsc151515g00003 633 Pfam Protein tyrosine and serine/threonine kinase 315 544 IPR001245 GO:0004672|GO:0006468
Stsc151515g00003 633 MobiDBLite consensus disorder prediction 610 633 - -
Stsc151515g00003 633 ProSiteProfiles Protein kinase domain profile. 310 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151515g00003 Stsc-Chr151515 27586 32227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151515g00003 298 590 Trihelix Transcription Factor Family AT5G38560 44.257 1.54e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Stsc151515g00003 PK_Tyr_Ser-Thr 7.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151515g00003 - - gmx:100813141 998.038