Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151515g00002 ATGAAAATGAAGTTAAAGCAAGAGGTAAAGCATTGCATGGATGAACTCAACTGTAGCATTGTGGTTATGAAAGGCTCAAAACCAAAAGTTCTCAGGCTTAACTTAGGATGCTCTGATGAACTCCAAACTCCATTTTTCTCTGCTGCTACTTCACCGGATATAGCAATTGGAAAGTTCAAAGGCCGCAGATTGAAGCATTCAACCCCAGTGAGTAGCCCTGAAGAACCAGGTACTTCTGCCACCAGAACCATTGGAGTTGACTCAGAGTCAAGTTCTGACTCAATGGCTTCTCTTTTCCAAGTCTATGAGCAAAATCCACTGTACGAGGGACTGCACAACAAAAGAACACACCAACCAATCAATGAGCCCAAAGAGTTCAACTTCCCGCCACAATTATACTTTGATTTGGAAAAGGATTGCCCTCCCACAATGGGGACACATCCAATCCCACATGCGTCCAGTGATAACAAGGATGTATTTTGGACTCCTCCTCAAAACCACATTTTGAATGAGAAGCTTCAAAAAACAGAAAAGAACATATTTACCCAAAGAACCAAATCTCCAACTCCCAAAACACTACTTGAGAATTTTAGACATTGTGATCAAGAAATGAAAAGGACAAATAATGAACTTGGGTTTAACCAATNNNNNNNNNNAAACTTGGGCAACAGAGGTAATGCCACCATTCCTATGGGCAGAACTTCGTGTATACCTCCTCCCTTGTGCTCTCAGTGTCAGAACAAAGCACCAGTGTTCGGAAAACCTCCTAGACAGTTTTCTTTCAAGGAGATAGAGGAAGCTACTGATATGTTCTCAGATGCGAATTTTTTAGCTGAAGGTGGATTTGGTATTGTCCACAAGGGAATTCTCAGAGATGGCCAGGTTGTTGCTGTGAAACAGTTAAAGTTCGGAGGCTCTCAAGCTGATCTTGATTTCTGCAGAGAAGTTCGTGTTTTGAGCTGTGCACAACACAGAAATGTTGTGTTGTTGATAGGATTTTGTGTAGAGGCCAATTTGAGAATATTAGTCTATGAGTACATATGCAATGGATCCTTGGACCTTTACTTACATGGAGATGAGAATACACCCTTGGATTGGAACTCACGGTTAAAGATAGCAATTGGAGCTGCAAGAGGGTTACGCTACCTTCATGAAGATTGCAGAGTTGGTTGCATAGTGCACAGAGACTTTCGACCCAGGAATATTCTCTTAACGCATGACTTTGAACCTTTGGTGGCTGATTTTGGGCTTGCTAGATGGCACTCAGAATGTTATATAAATACTGAACAAGATCGAGTTGTAGGAACGTCAGGGTATCTTGCCCCAGAGTATCTTGAAGCTGGAAATCTTACATACAAAGTAGACGTATATGCATTTGGAATCGTTTTACTAGAGTTAATAACAGGTCGAAGAATCAGTGACTTGGAACAATATAATGGGCACTCATTTCTTTCTCAATGGTTTCATCCCATACGCATGTTAGAGCCAGATCATATATTGCAAAACGTTCGGTCTCTTAACCCATACTTAGGCTTTGAGGCCTCATTGGAATTTAACCTTCAATTACAAGCCATGGCAAGAGCTGCTTCATTGTGTCTACGTCTGGATCCTGATGCAAGACCTCCAATGTCCAAGATACTGAGAGTACTGGAAGGGGGTGATGCAGTTCGTCCTATTGGTTTAGACTTCAATTCAGTTGGTAATAGAAGTGGCCATTTAAGTGGTTTGAGTTCTCACACTCCACCTAAAGGTACTATAAGTCATTCTCGTAGGTTATCACATTGA 1785 0.4134 MKMKLKQEVKHCMDELNCSIVVMKGSKPKVLRLNLGCSDELQTPFFSAATSPDIAIGKFKGRRLKHSTPVSSPEEPGTSATRTIGVDSESSSDSMASLFQVYEQNPLYEGLHNKRTHQPINEPKEFNFPPQLYFDLEKDCPPTMGTHPIPHASSDNKDVFWTPPQNHILNEKLQKTEKNIFTQRTKSPTPKTLLENFRHCDQEMKRTNNELGFNQXXXXNLGNRGNATIPMGRTSCIPPPLCSQCQNKAPVFGKPPRQFSFKEIEEATDMFSDANFLAEGGFGIVHKGILRDGQVVAVKQLKFGGSQADLDFCREVRVLSCAQHRNVVLLIGFCVEANLRILVYEYICNGSLDLYLHGDENTPLDWNSRLKIAIGAARGLRYLHEDCRVGCIVHRDFRPRNILLTHDFEPLVADFGLARWHSECYINTEQDRVVGTSGYLAPEYLEAGNLTYKVDVYAFGIVLLELITGRRISDLEQYNGHSFLSQWFHPIRMLEPDHILQNVRSLNPYLGFEASLEFNLQLQAMARAASLCLRLDPDARPPMSKILRVLEGGDAVRPIGLDFNSVGNRSGHLSGLSSHTPPKGTISHSRRLSH 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151515g00002 594 SUPERFAMILY Protein kinase-like (PK-like) 251 550 IPR011009 -
Stsc151515g00002 594 MobiDBLite consensus disorder prediction 137 163 - -
Stsc151515g00002 594 MobiDBLite consensus disorder prediction 65 90 - -
Stsc151515g00002 594 Pfam Protein tyrosine and serine/threonine kinase 276 505 IPR001245 GO:0004672|GO:0006468
Stsc151515g00002 594 MobiDBLite consensus disorder prediction 571 594 - -
Stsc151515g00002 594 ProSiteProfiles Protein kinase domain profile. 271 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151515g00002 594 FunFam Os07g0541700 protein 347 436 - -
Stsc151515g00002 594 ProSitePatterns Tyrosine protein kinases specific active-site signature. 392 404 IPR008266 GO:0004672|GO:0006468
Stsc151515g00002 594 PANTHER OS01G0750732 PROTEIN 199 552 - -
Stsc151515g00002 594 Gene3D Phosphorylase Kinase; domain 1 240 346 - -
Stsc151515g00002 594 MobiDBLite consensus disorder prediction 71 90 - -
Stsc151515g00002 594 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 243 346 - -
Stsc151515g00002 594 Gene3D Transferase(Phosphotransferase) domain 1 347 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151515g00002 Stsc-Chr151515 27586 32227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151515g00002 259 551 Trihelix Transcription Factor Family AT5G38560 44.631 6.56e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Stsc151515g00002 PK_Tyr_Ser-Thr 6.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151515g00002 - - gmx:100813141 916.376